. 2023 Sep 21;14(9):1829. doi: 10.3390/genes14091829

Table 8.

Cp gene expression variation in years affected by heavy rain.

Gene	Group	HRY vs. MRY				HRY + WL vs. MRY
		D		F		D		M		C		F
		LFC	Padj	LFC	Padj	LFC	Padj	LFC	Padj	LFC	Padj	LFC	Padj
atpI	ATP-SYN									−1.01	*	−1.19	**
atpE										−1.18	*	−1.05	*
atpB						−1.28	**					−1.04	*
petA	Cyt.b6/f	1.01	**	1.07	**	1.36	*******	1.02	*	1.40	*******	1.55	*******
petL						1.35	**	1.10	*	1.52	**	1.52	*******
petG		1.04	**	1.07	*	1.83	*******	1.50	**	1.70	**	1.83	*******
rpl33	LS-RP	1.16	*	1.04	**	1.07	*			1.16	**	1.41	*******
rpl20		1.40	*	1.36	*******	1.33	**			1.30	**	1.12	**
ndhB	NADH-OR			1.40	**			1.08	*	1.09	*	1.28	*******
ndhJ						1.08	**	1.02	**	1.08	**	1.04	**
ndhB				1.34	**					1.10	*	1.23	*******
ndhH				−1.12	*
psaB	PSI	−1.09	**	−1.03	**	−1.16	*******	−1.07	*	−1.08	*	−1.39	*******
psaA		−1.13	**	−1.23	*******	−1.08	**	−1.01	**	−1.46	*******	−1.52	*******
psaJ		1.02	*******			2.08	*******			1.63	*******
psbA	PSII	−1.13	**	−1.27	**	−1.04	*	−1.58	*******	−1.04	*	−2.14	*******
psbI				1.19	**			1.00	*			1.82	*******
psbD						−1.16	**	−1.00	*	−1.08	*	−1.20	***
psbC						−1.05	**	−1.04	*	−1.11	*	−1.12	***
psbZ								−1.45	**			−1.37	***
psbE								−1.10	*			−1.16	*
rpoC2	RNA-POL			−1.25	**							−1.10	*
rbcL	RuBisCO							−1.18	*			−1.09	*
rps7	SS-RP									1.12	**
rps16										1.26	*
rps18				1.51	*******							1.47	*******

Log fold change (LFC) values are negative and positive respectively in down- and up-regulated genes vs. control (year with no unexpected heavy rain events). Expression trends shared among all cultivars within heavy rain (HRY) or waterlogging events (HRY+WL) are shaded in grey. Gene expression trends conserved in both events are bolded. ***, **, * respectively significant for p < 0.01, 0.05, 0.1. ATP-SYN, ATP synthases; Cyt.b6/f, Cytochrome b6/f complex; LS-RP, Large subunit ribosomal proteins; PSI, Photosystem I; PSII, Photosystem II; RNA-POL, RNA polymerase; SS-RP, Small subunit ribosomal proteins.