Table 1.
Differentially expressed genes or top 20 genes based on absolute log2(fold-change) values between the rumen tissue samples of high- and low-RFI groups for Angus, Charolais and Kinsella breeds.
| Ensembl ID | Gene symbol | P-value | FDR | log2(FC) | Breed |
|---|---|---|---|---|---|
| ENSBTAG00000046725 | TNNC2 | 5.61 × 10−7 | 5.62 × 10−3 | − 5.93 | Kinsella |
| ENSBTAG00000018204 | MYH1 | 6.20 × 10−7 | 5.62 × 10−3 | − 5.85 | Kinsella |
| ENSBTAG00000013921 | CKM | 7.30 × 10−7 | 5.62 × 10−3 | − 4.05 | Kinsella |
| ENSBTAG00000021218 | MYLPF | 9.53 × 10−7 | 5.62 × 10−3 | − 5.65 | Kinsella |
| ENSBTAG00000018369 | MYL2 | 1.72 × 10−6 | 5.62 × 10−3 | − 5.77 | Kinsella |
| ENSBTAG00000052709 | – | 1.91 × 10−6 | 5.62 × 10−3 | − 5.70 | Kinsella |
| ENSBTAG00000007090 | MYH2 | 2.33 × 10−6 | 5.62 × 10−3 | − 5.41 | Kinsella |
| ENSBTAG00000010880 | TNNI2 | 2.81 × 10−6 | 5.62 × 10−3 | − 5.41 | Kinsella |
| ENSBTAG00000009707 | MYL1 | 3.00 × 10−6 | 5.62 × 10−3 | − 5.80 | Kinsella |
| ENSBTAG00000022158 | TNNT3 | 3.06 × 10−6 | 5.62 × 10−3 | − 4.92 | Kinsella |
| ENSBTAG00000045757 | TNNC1 | 3.08 × 10−6 | 5.62 × 10−3 | − 5.24 | Kinsella |
| ENSBTAG00000014547 | PGAM2 | 3.15 × 10−6 | 5.62 × 10−3 | − 5.15 | Kinsella |
| ENSBTAG00000009703 | MYH7 | 3.25 × 10−6 | 5.62 × 10−3 | − 5.48 | Kinsella |
| ENSBTAG00000022244 | ACTN3 | 3.26 × 10−6 | 5.62 × 10−3 | − 5.07 | Kinsella |
| ENSBTAG00000048585 | – | 3.28 × 10−6 | 5.62 × 10−3 | − 5.31 | Kinsella |
| ENSBTAG00000006541 | ATP2A1 | 3.30 × 10−6 | 5.62 × 10−3 | − 3.96 | Kinsella |
| ENSBTAG00000046332 | ACTA1 | 3.60 × 10−6 | 5.78 × 10−3 | − 5.05 | Kinsella |
| ENSBTAG00000031573 | NMRK2 | 8.23 × 10−6 | 1.25 × 10−2 | − 5.21 | Kinsella |
| ENSBTAG00000020080 | MYBPC2 | 9.62 × 10−6 | 1.38 × 10−2 | − 5.04 | Kinsella |
| ENSBTAG00000005534 | ENO3 | 1.15 × 10−5 | 1.57 × 10−2 | − 3.70 | Kinsella |
| ENSBTAG00000005333 | MB | 3.11 × 10−5 | 4.04 × 10−2 | − 3.84 | Kinsella |
| ENSBTAG00000020223 | CASQ1 | 3.30 × 10−5 | 4.09 × 10−2 | − 3.99 | Kinsella |
| ENSBTAG00000018369 | MYL2 | 1.58 × 10−3 | 1.00 | − 4.22 | Angus |
| ENSBTAG00000018204 | MYH1 | 2.84 × 10−3 | 1.00 | − 4.05 | Angus |
| ENSBTAG00000046332 | ACTA1 | 2.74 × 10−3 | 1.00 | − 4.03 | Angus |
| ENSBTAG00000021218 | MYLPF | 2.73 × 10−3 | 1.00 | − 4.00 | Angus |
| ENSBTAG00000045757 | TNNC1 | 1.37 × 10−3 | 1.00 | − 3.98 | Angus |
| ENSBTAG00000009707 | MYL1 | 1.65 × 10−3 | 1.00 | − 3.97 | Angus |
| ENSBTAG00000031573 | NMRK2 | 2.62 × 10−3 | 1.00 | − 3.97 | Angus |
| ENSBTAG00000007090 | MYH2 | 1.42 × 10−3 | 1.00 | − 3.96 | Angus |
| ENSBTAG00000052488 | SPINK9 | 5.28 × 10−4 | 1.00 | − 3.96 | Angus |
| ENSBTAG00000052709 | – | 1.28 × 10−3 | 1.00 | − 3.95 | Angus |
| ENSBTAG00000011392 | MYBPC1 | 4.06 × 10−3 | 1.00 | − 3.95 | Angus |
| ENSBTAG00000010880 | TNNI2 | 1.78 × 10−3 | 1.00 | − 3.94 | Angus |
| ENSBTAG00000009703 | MYH7 | 1.55 × 10−3 | 1.00 | − 3.94 | Angus |
| ENSBTAG00000011734 | ANKRD1 | 3.45 × 10−3 | 1.00 | − 3.92 | Angus |
| ENSBTAG00000046725 | TNNC2 | 2.99 × 10−3 | 1.00 | − 3.92 | Angus |
| ENSBTAG00000022158 | TNNT3 | 1.20 × 10−3 | 1.00 | − 3.80 | Angus |
| ENSBTAG00000022244 | ACTN3 | 1.39 × 10−3 | 1.00 | − 3.80 | Angus |
| ENSBTAG00000005333 | MB | 1.57 × 10−3 | 1.00 | − 3.74 | Angus |
| ENSBTAG00000008394 | MYL3 | 1.32 × 10−2 | 1.00 | − 3.72 | Angus |
| ENSBTAG00000007782 | MYOT | 6.05 × 10−3 | 1.00 | − 3.70 | Angus |
| ENSBTAG00000037768 | MMP3 | 1.93 × 10−4 | 4.82 × 10−1 | − 4.46 | Charolais |
| ENSBTAG00000032642 | – | 1.09 × 10−3 | 1.00 | − 4.18 | Charolais |
| ENSBTAG00000046633 | – | 1.13 × 10−3 | 1.00 | − 3.87 | Charolais |
| ENSBTAG00000021565 | – | 1.34 × 10−2 | 1.00 | − 3.23 | Charolais |
| ENSBTAG00000005353 | DES | 4.90 × 10−4 | 6.68 × 10−1 | − 2.81 | Charolais |
| ENSBTAG00000039406 | – | 4.56 × 10−4 | 6.61 × 10−1 | 2.69 | Charolais |
| ENSBTAG00000015441 | ACTG2 | 4.49 × 10−4 | 6.61 × 10−1 | − 2.67 | Charolais |
| ENSBTAG00000051421 | PCP4 | 7.05 × 10−3 | 1.00 | − 2.65 | Charolais |
| ENSBTAG00000033803 | FABP7 | 4.54 × 10−3 | 1.00 | − 2.64 | Charolais |
| ENSBTAG00000027279 | – | 1.23 × 10−2 | 1.00 | − 2.61 | Charolais |
| ENSBTAG00000006546 | GSTA2 | 3.57 × 10−3 | 1.00 | − 2.57 | Charolais |
| ENSBTAG00000011207 | CNN1 | 3.37 × 10−4 | 6.40 × 10−1 | − 2.49 | Charolais |
| ENSBTAG00000046124 | KRT36 | 4.19 × 10−5 | 3.74 × 10−1 | − 2.18 | Charolais |
| ENSBTAG00000047121 | – | 7.73 × 10−3 | 1.00 | − 2.13 | Charolais |
| ENSBTAG00000015988 | MYH11 | 5.49 × 10−5 | 3.74 × 10−1 | − 2.12 | Charolais |
| ENSBTAG00000011424 | TPM2 | 7.77 × 10−5 | 3.96 × 10−1 | − 2.11 | Charolais |
| ENSBTAG00000044123 | HAND2 | 3.79 × 10−2 | 1.00 | − 2.09 | Charolais |
| ENSBTAG00000017305 | – | 1.01 × 10−1 | 1.00 | − 2.09 | Charolais |
| ENSBTAG00000049878 | – | 1.18 × 10−1 | 1.00 | − 2.03 | Charolais |
| ENSBTAG00000011473 | MYL9 | 6.20 × 10−6 | 1.69 × 10−1 | − 2.03 | Charolais |