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cgMLST-based MST (1100 loci) of C. jejuni isolated from cattle, sheep, poultry and river samples. Complex clonal CC21 and CC45 are represented on the MST and ST of the strains are indicated. Taking into account an allelic difference of 11 for the clustering of the strains in cgMLST, only one C. jejuni strain from water (identified by a white star) could be linked to strains from sheep (7 allele differences). The number of sections in a circle corresponds to the number of strains.
