Table 1.
Bacterial species capable of expressing GUS.
| Genus | Species | Gene ID a | E Deconjugation b | PDB c Database (Accession ID) |
Reference |
|---|---|---|---|---|---|
| Alistipes | EXC72_RS02090 ID: 78178623 |
[25,32] | |||
| Akkermansia | muciniphila | GOZ73_RS09295 ID: 60881251 |
[31,32] | ||
| Bacteroides | Fragilis | I6J55_RS13335 ID: 66330823 |
Yes | 3CMG | [31,32] |
| cellulosilyticus | INE78_RS14030 ID: 66307762 |
[32] | |||
| intestinalis | I1224_RS00440 ID: 69505108 |
[32] | |||
| uniformis | INE75_RS18175 ID: 66283800 |
6NZG, 6D1N, 6D41, 6D50, 6D6W, 6D7F, 6D89, 6D8G | [32,33,34] | ||
| Ovatus | Bovatus_RS21525 ID: 29455654 |
6D8K | [32,34] | ||
| Dorei | FYB91_RS01050 ID: 56614211 |
6ED1 | [32,35] | ||
| massiliensis | I6J55_RS13335 ID: 66330823 |
[32] | |||
| Vulgatus | GAIMETA21_RS00905 ID: 69838528 |
[32] | |||
| Bacillus | thuringiensis | A9498_RS29930 ID: 39691567 |
[32,36] | ||
| Bifidobacterium | Dentium | BIFDEN_RS03045 ID: 69535529 |
6LD0,6LD6, 6LDB, 6LDC, 6LDD | [32,37] | |
| Citrobacter | [32] | ||||
| Clostridium | perfringens | uidA [31] ID: 69447906 |
yes | 6CXS, 6JKM, | [32,38,39] |
| Collinsella | tanakaei YIT 12063 | uidA ID: 62759750 |
[32] | ||
| Dermabacter | [32] | ||||
| Edwardsiella | piscicida | uidA ID: 72529797 |
[32] | ||
| Ictaluri | uidA ID: 69540280 |
[32] | |||
| Escherichia | Coli | uidA ID: 946149 |
yes | 6LEG, 3K46, 3K4A, 3K4D, 3LPF, 3LPG, 4JHZ, 5CZK, 6LEG, 6LEJ, 6LEL, 6LEM, 7PR6 | [31,32,37,39,40,41,42] |
| Eubacterium | Eligens | uidA ID: 41357285 |
yes | 6BJW | [32,43] |
| Faecalibacterium | prausnitzii | uidA ID: 56863673 uidA ID: 34751772 |
yes | 6U7I, 6ED2 | [32,35] |
| Fusicatenibacter | saccharivorans | 6NCY, 6NCZ | [32,44] | ||
| Lactobacillus | rhamnosus | RHM_0050 ID: 12473125 |
yes | 6ECA | [32,35] |
| Gasseri | J3E66_RS04340 ID: 66468975 |
[32,45] | |||
| Marvinbryantia | [32] | ||||
| Propionibacterium | Acnes | uidA ID: 12534223 |
[32] | ||
| Parabacteroides | Merdae | DY317_RS05255 ID: 49202940 |
6DXU | [32] | |
| Johnsonii | HMPREF1077_RS04680 ID: 43351364 |
[32] | |||
| Roseburia | Hominis | uidA ID: 77458459 |
yes | 6MVH | [32] |
| intestinalis | uidA ID: 61434358 |
[32] | |||
| Ruminococcus | Gnavus | N769_RS0107715 ID: 35896210 |
yes | 6EC6 | [32,35] |
| Streptococcus | agalactiae | uidA ID: 66885601 |
yes | 4JKL, 4JKK, 4JKL, | [32,39] |
| equisimilis | GGS_1280 ID: 13799427 |
[32] | |||
| Tannerella | forsythia | BFO_RS10495 ID: 34759432 |
[32,39] |
a Accession ID are from NCBI. b Ervin S.M et al. 2019 JBC 294(49): 18586–18599. c Accession ID are from PDB database.