Table 5.
Monosaccharide (Ligand) | Intermolecular Interactions | |||
---|---|---|---|---|
Binding Affinity (kcal/mol) | No. H-Bond |
Closest Interacting Residues (Distance, Å) |
Closest Interacting Residue | |
TyrRS from S. aureus (1JIJ) | ||||
Glucuronic acid | −5.8 | 4 | Lys226 (2.155), Lys226 (2.112), Gly233 (2.446), Lys234 (2.721), Lys234 (3.468) | Lys226:HZ3 |
Glucose | −7.0 | 8 | Asn124 (2.835), Gln174 (2.131), Asp80 (2.449), Gln196 (2.745), Asp40 (2.216), Tyr36 (2.241), Gln190 (2.511), Asp177 (1.898) | Asp177:OD1 |
Galactose | −7.1 | 7 | Tyr170 (2.845), Tyr170 (2.678), Gln196 (2.478), Asp80 (2.185), Gln196 (2.197), Asp80 (2.039), Gln196 (2.565) | Asp80:OD2 |
Fructose | −6.6 | 5 | Asp80 (2.752), Gln196 (2.824), Thr75 (2.171), Tyr170 (2.402), Tyr36 (2.647) | Tyr75:OG1 |
Human peroxiredoxin (1HD2) | ||||
Glucuronic acid | −5.3 | 6 | Asn21 (2.581), Asn21 (2.362), Arg86 (3.037), Arg86 (2.250), Gly92 (2.173), Leu96 (2.735), Gly82 (3.541), Glu91 (3.550) | Gly92:HN |
Glucose | −5.4 | 4 | Asn76 (2.064), Asn122 (2.303), Asp77 (2.368), Asp77 (2.432) | Asn76:HD21 |
Galactose | −5.1 | 5 | Asn76 (2.077), Asp77 (2.309), Arg124 (2.861), Arg124 (2.431), Asp77 (2.579), Asp77(2.488) | Asn76:HD21 |
Fructose | −5.3 | 5 | Gly17 (3.034), Gly92 (2.823), Val94 (2.584), Thr81 (2.738), Leu96 (2.998), Glu16 (3.557) | Val94:O |
Acyl-CoA: cholesterol acyltransferase (ACAT, 1WL4) | ||||
Glucuronic acid | −5.2 | 3 | Asn68 (2.254), Ser87 (2.125), Ser87 (1.771), Gly66 (3.694) | Ser87:HG |
Glucose | −4.9 | 5 | Thr36 (2.454), Asp32 (2.429), Asp32 (2.495), Asp32 (2.468), Leu206 (2.527), Ser35 (3.564), Gly76 (3.650) | Asp32:OD1 |
Galactose | −4.9 | 7 | Arg223 (2.284), Arg223 (2.036), Asn227 (2.563), Asn227 (2.688), Met231 (2.864), Asn227 (2.369), Gly225 (2.553) | Arg223:HH21 |
Fructose | −4.9 | 5 | Ser208 (1.870), Ser208 (2.117), Ser208 (1.880), Ser208 (3.072), Asp32 (1.916) | Ser208:HN |