Fig. 3.

Comparing performance between PhyloAcc and PhyloAcc-GT. The top row shows the AUPRC while varying the ratio of simulated conserved to accelerated loci. The bottom row shows a single precision-recall curve at a ratio of 50 conserved loci per accelerated locus. In A–C, the specified target lineages match those lineages on which accelerations were simulated. (A) Loci simulated with a single monophyletic acceleration. (B) Loci simulated with two independently accelerated clades. (C) Loci simulated with three independently accelerated clades. (D) Loci simulated with two independently accelerated clades, but with additional target lineages provided to each method.