Table 2.

Test Sensitivity of PhyloAcc-GT to θ Mis-specifications.

No. Indep.	Scaling	TPR@	TPR@	Average	Average
Acceleration	Factor	1%FPR	5%FPR	${\hat{r}}_1-r_1$	${\hat{r}}_2-r_2$
1	0.5	0.98	0.98	0.019	0.063
	0.8	0.98	0.99	0.014	0.027
	1.5	0.97	0.98	0.001	$-$ 0.037
	2	0.90	0.98	$-$ 0.001	$-$ 0.047
	Unif(0,2)	0.94	0.97	0.019	$-$ 0.015
	Estimated θ	0.98	0.98	0.012	$-$ 0.038
2	0.5	0.99	1	0.016	0.075
	0.8	0.98	0.99	0.008	0.008
	1.5	0.97	1	$-$ 0.002	$-$ 0.040
	2	0.97	1	$-$ 0.008	$-$ 0.047
	Unif(0,2)	0.99	0.99	0.001	0.047
	Estimated θ	0.96	0.99	$-$ 0.004	$-$ 0.045

Note.—TPRs at the two FPR cutoffs are computed based on logBF1 among null loci and accelerated loci.