Figure 2: Assembly results on three metagenomic projects.

‘Human Gut’ represents the co-assembly of the four human gut samples, ‘Anaerobic Digester’ is the co-assembly of the three AD2 time-series samples. (A) CheckM evaluation. A MAG is ‘near-complete’ if its completeness is ≥ 90% and its contamination is ≤ 5%, ‘high-quality’ if completeness ≥ 70% and contamination ≤ 10%, ‘medium quality’ if completeness ≥ 50% and contamination ≤ 10%. (B) The percentage of mapped HiFi reads on MAGs. (C-D) The distribution of SNV density (%) and coverage depths for near-complete circular contigs generated by each assembler on all datasets (the y-axes have been sqrt-scaled); here the bars are overlaid and not stacked.