Table 3.
Comparison of the genotypes of eight founder lines determined using liquid chip technology and sequencing data
| Variety | N709 | N730 | N734 | N739 | N741 | N743 | N744 | N745 |
|---|---|---|---|---|---|---|---|---|
| The number of SNPs different with sequencing | ||||||||
| Homozygous | 23 | 11 | 19 | 663 | 49 | 23 | 18 | 28 |
| Heterozygous | 61 | 39 | 42 | 4825 | 199 | 34 | 39 | 70 |
| Indel | 3 | 2 | 2 | 0 | 2 | 1 | 1 | 1 |
| Missing | 586 | 574 | 205 | 1232 | 6076 | 217 | 1315 | 582 |
| The number of SNPs consistent with sequencing | 39,327 | 39,374 | 39,732 | 33,280 | 33,674 | 39,725 | 38,627 | 39,319 |
| Accuracy | 98.32% | 98.44% | 99.33% | 83.20% | 84.19% | 99.31% | 96.57% | 98.30% |