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Number of genes at each step of the analysis for stages 1 and 2 samples.
| Analysis = steps | data type (cells/pseudobulk) | ||||
|---|---|---|---|---|
| 1) Raw data | Cells | 2) Quality control | Cells | 3) Cell clustering & aggregation | Pseudobulk | 4) Gene clustering | Pseudobulk | |
| Stage 1 | 9,477 | 9,119 | 9,119 | 3,994 |
| Stage 2 | 9,586 | 9,309 | 9,309 | 3,994 |
