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. Author manuscript; available in PMC: 2024 Jul 7.
Published in final edited form as: J Proteome Res. 2023 May 26;22(7):2246–2255. doi: 10.1021/acs.jproteome.2c00807

Figure 4.

Figure 4.

FDR analysis done before and after rescoring using test spectra as the queries. True matches are from the human, mouse, and Chinese hamster proteome and defined as those that match the peptide sequence, charge, and modifications of the query. Spectra were predicted for each Mascot sequence search match and a corrected Stein-Scott dot product S calculated to rescore the matches.