ALYREF |
Pre-mRNA transport and splicing |
Methylation of protein |
THP-1 (AML) |
(37) |
AR |
Tumour promoting gene |
Increased expression via epigenetic regulation |
LNCaP, C4-2 (Prostate cancer) |
(42) |
C-Myc |
Regulate NF-κB pathway |
Increased expression and stabilise protein |
T24, 5637 (Bladder cancer), MUA PaCa-2, SW1990 (Pancreatic cancer) |
(41, 43) |
CANNTG |
C-Myc-binding E-box element |
Reduced expression of downstream genes via epigenetic regulation |
BGC823 and SGC7901 (Gastric cancer) |
(35) |
CCNE1 |
G1/S transition via CDK2 regulation |
Reduced expression via epigenetic regulation |
U2OS |
(44) |
CCT4 |
Component of TRiC complex |
Methylation of protein |
THP-1 (AML) |
(37) |
CCT7 |
Component of TRiC complex |
Methylation of protein |
THP-1 (AML) |
(37) |
CD74 |
Component of MHC II molecule |
Reduced expression via epigenetic regulation |
Liver cancer |
(45) |
CDH1 |
Tumour suppressor gene |
Reduced expression via epigenetic regulation |
A549 (Lung cancer) |
(46) |
CIITA |
Component of MHC II molecule |
Reduced expression via epigenetic regulation |
Liver cancer |
(45) |
CPSF6 |
3’ RNA cleavage and polyadenylation |
Methylation of protein |
THP-1 (AML) |
(37) |
E2F1 |
Transcription factor that can regulate apoptosis |
Methylation and destabilisation of protein |
U2OS |
(47) |
FA genes |
Inter-strand crosslink (CIL)-induced DNA damage repair |
Increased expression via epigenetic regulation |
U251MG, T98G, U118MG (Glioblastoma) |
(48) |
FBW7 |
C-Myc regulator gene |
Reduced expression via epigenetic regulation |
PaCa-2, SW1990 (Pancreatic cancer) |
(41) |
FOXP1 |
Activates oestrogen receptor (ER) |
Increased expression via epigenetic regulation |
MCF7 (Breast cancer) |
(34) |
IFI16 (IFI204) |
Regulator of STING/cGAS signalling pathway |
Methylation of protein to control function |
A375, WM115, B16 (Melanoma) |
(49) |
Mxi1 |
C-Myc agonist |
Methylation of protein leading to degradation |
H1299, A549, H460, H522, H358 (NSCLC) |
(50) |
NLRC5 |
Regulator of MHC I gene expression |
Decreased expression of gene |
B16, CCLE melanoma cell lines (Melanoma) |
(49) |
NM23 |
Tumour suppressor gene |
Reduced expression via epigenetic regulation |
NIH/3T3 |
(51) |
p53 |
Promotes cell cycle arrest to allow DNA repair, regulates apoptosis |
Methylation of protein to inactivate pro-apoptotic function |
U2OS, HSPCs |
(52, 53) |
PNN |
Part of exon junction complex (EJC) |
Methylation of protein |
THP-1 (AML) |
(37) |
RPS10 |
Component of the 40S ribosomal subunit |
Methylation of protein |
THP-1 (AML) |
(37) |
RUVBL1 |
Component of TIP60 complex for directing DNA damage repair towards the HR pathway |
Methylation of protein to allow complex formation |
HeLa (Cervical cancer) |
(54) |
SFPQ |
Early splicing factor |
Methylation of protein |
THP-1 (AML) |
(37) |
Sm proteins |
Formation of the spliceosome |
Methylation required for smRNP biogenesis |
HeLa (Cervical cancer) |
(55) |
SNAIL1 |
Epithelial-mesenchymal transition (EMT) and metastatic activator factor |
Increased expression via epigenetic regulation |
A549 (Lung cancer) |
(46) |
SNRPB |
Component of SMN-Sm complex |
Methylation of protein |
THP-1 (AML) |
(37) |
SPDEF |
Tumour suppressor gene |
Reduced expression via epigenetic regulation |
A549 (Lung cancer) |
(46) |
SRSF1 |
Prevents exon skipping |
Methylation of protein |
THP-1 (AML) |
(37) |
ST7 |
Tumour suppressor gene |
Reduced expression via epigenetic regulation |
NIH/3T3 |
(51) |
SUPT5H |
mRNA processing, transcription and elongation of RNAP II |
Methylation of protein |
THP-1 (AML) |
(37) |
VIM |
Epithelial-mesenchymal transition (EMT) and metastatic activator factor |
Increased expression via epigenetic regulation |
A549 (Lung cancer) |
(46) |
WDR33 |
mRNA polyadenylation |
Methylation of protein |
THP-1 (AML) |
(37) |
ZNF326 |
Subunit of DBIRD complex that regulates alternative splicing |
Methylation requires for accurate splicing |
MDA-MB-231 (Breast cancer) |
(56) |