Table 5.
Species | Genome size, estimated without sequencing (Mbp) | Genome size, estimated as the size of the assembly with the largest N50 among published assemblies (Mbp) | Sequencing technology | Sequence Read Archive identifiers of reads | N50 of reads (bp) | Approximate genome coverage by readsa |
---|---|---|---|---|---|---|
Trifolium pratense | 636 [45], 474 [46], 418 [47], 557 [48] | 423 [49] | PacBio HiFi | SRR15433789 | 20,082 | 50 |
Manihot esculenta | 817 [50] | 706 [39] | PacBio HiFi | ERR5485301 | 20,363 | 42 |
Heracleum sosnowskyi | 1751 [48] | 1629 [44] | PacBio HiFi | SRR23251371, SRR23251372 | 14,679 | 22 |
Illumina Hi-C, paired-end | SRR23251383, SRR23251384 | 76 | 34 | |||
Myripristis murdjan | no estimates | 835 [51] | PacBio CLR | ERR3449630, ERR3449634, ERR3449635, ERR3453872, ERR3453873, ERR3453874, ERR3453875, ERR3453876 | 24,966 | 50 |
Illumina shotgun, paired-end b | ERR3655549 | 151 | 155 | |||
Adineta vaga | 362c [52] | 101c [53] | Oxford Nanopore | SRR13348928 | 38,562 | 50 |
Illumina shotgun, paired-end b | SRR13348929 | 251 | 331 | |||
Mytilus coruscus | 1858 [54] | 1567 [55] | Oxford Nanopore | ERR3415816 | 24,641 | 50 |
Illumina shotgun, paired-end b | ERR3431204 | 150 | 53 |
aThe approximate genome coverage was calculated based on the following genome sizes: Trifolium pratense 450 Mbp, Manihot esculenta 750 Mbp, Heracleum sosnowskyi 1700 Mbp, Myripristis murdjan 850 Mbp, Adineta vaga 100 Mbp, Mytilis coruscus 1600 Mbp
bUsed only for polishing, after the assembly
cThe cause of the discrepancy between genome size estimates for Adineta vaga is unknown