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. 2023 Oct 4;24:377. doi: 10.1186/s12859-023-05499-3

Table 5.

Information on the genomes and sequencing reads used in this article

Species Genome size, estimated without sequencing (Mbp) Genome size, estimated as the size of the assembly with the largest N50 among published assemblies (Mbp) Sequencing technology Sequence Read Archive identifiers of reads N50 of reads (bp) Approximate genome coverage by readsa
Trifolium pratense 636 [45], 474 [46], 418 [47], 557 [48] 423 [49] PacBio HiFi SRR15433789 20,082 50
Manihot esculenta 817 [50] 706 [39] PacBio HiFi ERR5485301 20,363 42
Heracleum sosnowskyi 1751 [48] 1629 [44] PacBio HiFi SRR23251371, SRR23251372 14,679 22
Illumina Hi-C, paired-end SRR23251383, SRR23251384 76 34
Myripristis murdjan no estimates 835 [51] PacBio CLR ERR3449630, ERR3449634, ERR3449635, ERR3453872, ERR3453873, ERR3453874, ERR3453875, ERR3453876 24,966 50
Illumina shotgun, paired-end b ERR3655549 151 155
Adineta vaga 362c [52] 101c [53] Oxford Nanopore SRR13348928 38,562 50
Illumina shotgun, paired-end b SRR13348929 251 331
Mytilus coruscus 1858 [54] 1567 [55] Oxford Nanopore ERR3415816 24,641 50
Illumina shotgun, paired-end b ERR3431204 150 53

aThe approximate genome coverage was calculated based on the following genome sizes: Trifolium pratense 450 Mbp, Manihot esculenta 750 Mbp, Heracleum sosnowskyi 1700 Mbp, Myripristis murdjan 850 Mbp, Adineta vaga 100 Mbp, Mytilis coruscus 1600 Mbp

bUsed only for polishing, after the assembly

cThe cause of the discrepancy between genome size estimates for Adineta vaga is unknown