Table 2.
Function and categorization of top 20 feature genes in SGM.
COG accession | Odds ratio | BH adjusted p | COG symbol | COG description | COG class | COG class summary |
---|---|---|---|---|---|---|
COG1168 | 0.0027 | 2.90E-69 | MalY | Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities | ER | Metabolism | Poorly characterized |
COG1045 | 0.018 | 4.15E-46 | CysE | Serine acetyltransferase | E | Metabolism |
COG2815 | 0 | 3.61E-40 | PASTA | PASTA domain, binds beta-lactams | M | Cellular processes and signaling |
COG4101 | 0.035 | 2.09E-32 | RmlC | Uncharacterized conserved protein, RmlC-like cupin domain | R | Poorly characterized |
COG2919 | 0.0497 | 6.57E-31 | FtsB | Cell division protein FtsB | D | Cellular processes and signaling |
COG0538 | 0.041 | 2.56E-30 | IcD | Isocitrate dehydrogenase | C | Metabolism |
COG3848 | 0.057 | 1.86E-25 | PykA2 | Phosphohistidine swiveling domain of PEP-utilizing enzymes | T | Cellular processes and signaling |
COG2899 | 0.051 | 6.62E-25 | TerC2 | Uncharacterized TerC-related membrane protein, DUF475 domain | P | Metabolism |
COG1085 | 0.082 | 2.21E-21 | GalT | Galactose-1-phosphate uridylyltransferase | G | Metabolism |
COG3360 | 0.056 | 2.66E-21 | Flavin-binding protein dodecin | R | Poorly characterized | |
COG1982 | 0.010 | 1.68E-20 | LdcC | Arginine/lysine/ornithine decarboxylase | E | Metabolism |
COG2046 | 0 | 9.30E-20 | MeT3 | ATP sulfurylase (sulfate adenylyltransferase) | P | Metabolism |
COG0439 | 0.109 | 4.88E-19 | AccC | Biotin carboxylase | I | Metabolism |
COG2273 | 0.114 | 1.42E-18 | BglS | Beta-glucanase, GH16 family | G | Metabolism |
COG0706 | 0.089 | 1.96E-18 | YidC | Membrane protein insertase Oxa1/YidC/SpoIIIJ | M | Cellular processes and signaling |
COG3485 | 0.102 | 3.44E-18 | PcaH | Protocatechuate 3,4-dioxygenase beta subunit | Q | Metabolism |
COG1514 | 0.095 | 3.19E-16 | ThpR | RNA 2′,3′-cyclic phosphodiesterase (2′-5’ RNA ligase) | J | Information storage and processing |
COG1647 | 0.105 | 7.28E-16 | YvaK | Esterase/lipase | Q | Metabolism |
COG4129 | 0.0665 | 1.68E-15 | YgaE | Uncharacterized membrane protein YgaE, UPF0421/DUF939 family | S | Poorly characterized |
COG0709 | 0.1295 | 3.39E-15 | SelD | Selenophosphate synthase | E | Metabolism |
Odds ratios and p-values were calculated using Scaory.