Table 3.
Top 20 Feature protein domains in RGM.
| Pfam accession | Odds ratio | BH adjusted p | Domain symbol | Domain description |
|---|---|---|---|---|
| PF02698 | 269.278 | 3.37E-66 | DUF218 | DUF218 domain |
| PF02557 | 132.458 | 1.61E-55 | VanY | D-alanyl-D-alanine carboxypeptidase |
| PF04328 | 69.048 | 2.42E-49 | Sel_put | Selenoprotein, putative |
| PF19460 | 42.1498 | 4.08E-42 | DUF5997 | Family of unknown function (DUF5997) |
| PF08402 | 36.816 | 7.04E-39 | TOBE_2 | TOBE domain |
| PF03334. | inf | 8.41E-37 | PhaG_MnhG_YufB | Na+/H+ antiporter subunit |
| PF09972 | 32.667 | 2.26E-35 | DUF2207 | Predicted membrane protein (DUF2207) |
| PF07152 | 34.8307 | 7.50E-35 | YaeQ | YaeQ protein |
| PF02589 | inf | 3.82E-32 | LUD_dom | LUD domain |
| PF00232 | inf | 1.51E-31 | Glyco_hydro_1 | Glycosyl hydrolase family 1 |
| PF13727 | 20.640 | 2.46E-31 | CoA_binding_3 | CoA-binding domain |
| PF13835 | 21.614 | 8.43E-30 | DUF4194 | Domain of unknown function (DUF4194) |
| PF02733 | inf | 2.40E-29 | Dak1 | Dak1 domain |
| PF13796 | 162.167 | 2.60E-29 | Sensor | Putative sensor |
| PF11855 | 20.896 | 2.90E-29 | DUF3375 | Protein of unknown function (DUF3375) |
| PF05437 | inf | 3.08E-29 | AzlD | Branched-chain amino acid transport protein (AzlD) |
| PF03591 | inf | 3.08E-29 | AzlC | AzlC protein |
| PF09278 | 40.795 | 4.22E-29 | MerR-DNA-bind | MerR, DNA binding |
| PF13555 | 19.333 | 1.19E-28 | AAA_29 | P-loop containing region of AAA domain |
| PF17885 | inf | 1.88E-28 | Smoa_sbd | Styrene monooxygenase A putative substrate binding domain |
Odds ratios and p-values were calculated using Scaory.