Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2023 Sep 21;14:1260531. doi: 10.3389/fgene.2023.1260531

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

Copyright © 2023 Chen, Chen, Wang, Qin, Zhang, Nand, Zhang, Li, Zhang, Liang and Xu.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

PMC Copyright notice

Performance comparison of repaq and other tools. (A) Shows the comparison ratio of comparison, (B) shows the compress time of comparison, while (C) shows the comparison of time to decompress. Three samples were tested in this experiment. X-axis indicates compression level setting, while Y-axis indicates compression ratio. The DSRC2 has only three compression levels (0,1,2), so it is aligned to the middle compression level (6,7,8) in the figure. Sample 1 is a paired-end deep target cap-turing data (39 GB + 39 GB), while sample 2 is a paired-end whole exome sequencing data (46 GB + 46 GB) and sample 3 is a single-end whole exome sequencing data (46 GB). For repaq, both non-LZMA mode (.rfq) and LZMA mode (.rfq.xz) mode were tested. For LZMA mode repaq, different threading setting were applied (T = 1, 2, 3).