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. 2023 Oct 4;16:150. doi: 10.1186/s13068-023-02399-9

Table 1.

Features of assembled genome and gene set for P. funiculosum NCIM1228

Features Observations
Genome statistics
Sequencing technology Roche 454
Genome size 37.75 (Mb)
Sequencing coverage 19x
HQ reads 9,21,942
HQ bases 4038,20,878
Average read length 438
Number of contigs 1248
Number of large contigs (> 500 bp) 888
Quality control
CEGMA (full length genes recovered) 95.56% (237/248)
CEGMA (partial length genes recovered) 98.39% (244/248)
Annotation (Software used)
Total proteins predicted (MAKER) 10,739
Hypothetical proteins 2,621
CAZymes predicted (CAZy database) 298
TFs predicted (PFAM) 451