Table 1. List of genomes from syntrophic SRB labeled by clade, generated in this study and compiled from public databases.
| Assembly | Organism | Proposed formal name | Genome size (bp) | Completeness | Contamination | GTDB_classification | Geographic location | Reference |
|---|---|---|---|---|---|---|---|---|
| JAJSZM000000000 | Desulfofervidales_sp._FWG156* | 1452671 | 90.31 | 1.42 | d__Bacteria;p__Desulfobacterota;c__Desulfofervidia;o__Desulfofervidales; f__DG-60;g__;s__ |
Pescadero Basin, Gulf of California | This study | |
| JAJSZL000000000 | Candidatus Desulfofervidaceae sp. 1* | 2230686 | 97.97 | 3.46 | d__Bacteria;p__Desulfobacterota;c__Desulfofervidia;o__Desulfofervidales; f__Desulfofervidaceae;g__;s__ |
Pescadero Basin, Gulf of California | This study | |
| JAJSZS000000000 | Candidatus Desulfofervidaceae sp. 2* | 2268002 | 98.24 | 3.49 | d__Bacteria; p__Desulfobacterota; c__Desulfofervidia; o__Desulfofervidales; f__Desulfofervidaceae; g__; s__ | Hydrothermal vent Pescadero Basin, Gulf of California | This study | |
| GCA_001577525.1 | HotSeep1 | 2540211 | 96.75 | 4.27 | d__Bacteria; p__Desulfobacterota; c__Desulfofervidia; o__Desulfofervidales; f__Desulfofervidaceae; g__Desulfofervidus; s__Desulfofervidus auxilii | Hydrothermal vent Guaymas Basin, Gulf of California | [32] | |
| HotSeep1_draft_B50 | HotSeep1 B50 | 2215853 | 95.53 | 9.35 | d__Bacteria; p__Desulfobacterota; c__Desulfofervidia; o__Desulfofervidales; f__Desulfofervidaceae; g__Desulfofervidus; s__Desulfofervidus auxilii | Hydrothermal vent Pescadero Basin, Gulf of California | This study | |
| CAJIMJ000000000 | HotSeep1 E37 | 1863098 | 87.40 | 3.46 | d__Bacteria; p__Desulfobacterota; c__Desulfofervidia; o__Desulfofervidales; f__Desulfofervidaceae; g__Desulfofervidus; s__Desulfofervidus auxilii | Guaymas Basin, Gulf of California | [40] | |
| CAJIMK000000000 | HotSeep1 E50 | 1842718 | 70.82 | 5.08 | d__Bacteria; p__Desulfobacterota; c__Desulfofervidia; o__Desulfofervidales; f__Desulfofervidaceae; g__Desulfofervidus; s__Desulfofervidus auxilii | Guaymas Basin, Gulf of California | [40] | |
| JAJSZN000000000 | HotSeep1 FWG170 | 1777984 | 86.7 | 6.74 | d__Bacteria;p__Desulfobacterota;c__Desulfofervidia;o__Desulfofervidales; f__Desulfofervidaceae;g__Desulfofervidus;s__Desulfofervidus auxilii |
Hydrothermal vent Pescadero Basin, Gulf of California | This study | |
| JAAXOL000000000 | Seep-SRB1a sp. 1 (str. 013792055) |
Syntrophophila gen. nov. sp. 1 | 3174343 | 97.42 | 4.03 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__B13-G4 sp013792055 |
Groundwater from Olkiluoto, Finland | [153] |
| JAJSZT000000000 | Seep-SRB1a sp. 2 (str. CR9063A) |
Syntrophophila gen. nov. sp. 2 | 3859851 | 99.35 | 2.15 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__ |
Cold seep, Costa Rica Margin | This study |
| JAJSZU000000000 | Seep-SRB1a sp. 2 (str. CR9063B) |
Syntrophophila gen. nov. sp. 2 | 3484925 | 87.56 | 1.94 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__ |
Cold seep, Costa Rica Margin | This study |
| JAJSZV000000000 | Seep-SRB1a sp. 2 (str. CR9063C) |
Syntrophophila gen. nov. sp. 2 | 2980801 | 64.05 | 0.00 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__ |
Cold seep, Costa Rica Margin | This study |
| JAAXOL000000000 | Seep-SRB1a sp. 3 (str. 014237195) |
Syntrophophila gen. nov. sp. 3 | 3489866 | 98.00 | 1.53 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__B13-G4 sp014237365 |
Cold seep, Gulf of Cadiz | [154] |
| JABZFQ000000000 | Seep-SRB1a sp. 3 (str. 014237365) |
Syntrophophila gen. nov. sp. 3 | 3489866 | 98.00 | 1.53 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__B13-G4 sp014237365 |
Cold seep, Gulf of Cadiz | [154] |
| JAJSZO000000000 | Seep-SRB1a sp. 4 (str. FWG171) |
Syntrophophila gen. nov. sp. 4 | 2505125 | 77.03 | 0.65 | d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales; f__ETH-SRB1;g__B13-G4;s__ |
Microbial mat, cold seep, Santa Monica Basin, California | This study |
| JAJSZP000000000 | Seep-SRB1a sp. 7 (str. FWG172) |
Syntrophophila gen. nov. sp. 7 | 2570901 | 92.1 | 4.73 | d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales; f__ETH-SRB1;g__B13-G4;s__ |
Microbial mat, cold seep, Santa Monica Basin, California | This study |
| JAIORM000000000 | Seep-SRB1a sp. 5 (str. 20073_SRB) |
Syntrophophila gen. nov. sp. 5 | 1938412 | 78.03 | 2.60 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__ |
Cold seep, Santa Monica Basin, California, USA | [37] |
| JAIORU000000000 | Seep-SRB1a sp. 5 (str. 20074_SRB) |
Syntrophophila gen. nov. sp. 5 | 1678217 | 72.61 | 3.96 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__ |
Cold seep, Santa Monica Basin, California, USA | [37] |
| JAABVG000000000 | Seep-SRB1a sp. 5 (str. S7142MS3) |
Syntrophophila gen. nov. sp. 5 | 2766087 | 88.86 | 2.58 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__ |
Cold seep, Santa Monica Basin, California, USA | [25] |
| JAJSZW000000000 | Seep-SRB1a sp. 5 (str. SM7059A) |
Syntrophophila gen. nov. sp. 5 | 3861344 | 89.65 | 1.29 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__ |
Cold seep, Santa Monica Basin, California, USA | This study |
| QMMZ00000000 | Seep-SRB1a sp. 6 (str. 003647525) |
Syntrophophila gen. nov. sp. 6 | 1690800 | 56.35 | 0.97 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__B13-G4 sp003647525 |
Hydrothermal sediment, Guaymas Basin, Gulf of California | [41] |
| JAFCZG000000000 | Seep-SRB1a sp. 8 (str. AB_03_Bin_172) |
Syntrophophila gen. nov. sp. 8 | 5464515 | 52.75 | 9.74 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__ |
Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDFV000000000 | Seep-SRB1a sp. 9 (str. Meg22_02_Bin_90) |
Syntrophophila gen. nov. sp. 9 | 3102898 | 83.52 | 3.87 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__ |
Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDJY000000000 | Seep-SRB1a sp. 9 (str. Meg22_24_Bin_68) |
Syntrophophila gen. nov. sp. 9 | 2156769 | 62.82 | 5.48 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__ |
Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDKW000000000 | Seep-SRB1a sp. 9 (str.Meg22_46_Bin_236) |
Syntrophophila gen. nov. sp. 9 | 2114727 | 57.68 | 1.68 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfobacterales; f__ETH-SRB1; g__B13-G4; s__ |
Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDAE000000000 | Desulfobacterales sp. AB_1215_Bin_34* | 3617733 | 88.46 | 3.59 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__C00003060; f__C00003106; g__C00003106; s__ |
Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] | |
| MAXM00000000 | Seep-SRB1g (str. C00003104) |
Desulfomellonium gen. nov. sp. 1 | 2209054 | 90.01 | 0.65 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__C00003060; f__C00003106; g__C00003106; s__C00003106 sp001751015 |
Hydrate Ridge, Oregon, USA | [33] |
| MANV00000000 | Seep-SRB1g (str. C00003106) |
Desulfomellonium gen. nov. sp. 1 | 2149125 | 90.08 | 0.00 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__C00003060; f__C00003106; g__C00003106; s__C00003106 sp001751015 |
Hydrate Ridge, Oregon, USA | [33] |
| JAJSZX000000000 | Seep-SRB1g (str. CR10073A) |
Desulfomellonium gen. nov. sp. 1 | 3489866 | 99.17 | 0.65 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__C00003060; f__C00003106; g__C00003106; s__C00003106 sp001751015 |
Cold seep, Costa Rica Margin | This study |
| JAJSZY000000000 | Seep-SRB1g (str. CR10073B) |
Desulfomellonium gen. nov. sp. 1 | 3824408 | 98.71 | 2.15 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__C00003060; f__C00003106; g__C00003106; s__C00003106 sp001751015 |
Cold seep, Costa Rica Margin | This study |
| JAABVH000000000 | Seep-SRB1g (str. S7142MS4) |
Desulfomellonium gen. nov. sp. 1 | 624626 | 36.28 | 0.16 | d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__C00003060; f__C00003106; g__C00003106; s__C00003106 sp001751015 |
Cold seep, Santa Monica Basin, California, USA | [25] |
| PQXD00000000 | Seep-SRB2 sp. 1 (str. G37) |
Desulfomithrium gen. nov. sp. 1 | 3571848 | 93.83 | 0.00 | d__Bacteria; p__Desulfobacterota; c__Dissulfuribacteria; o__Dissulfuribacterales; f__UBA3076; g__UBA3076; s__UBA3076 sp003194485 | Hydrothermal sediment, Guaymas Basin, Gulf of California | [24] |
| JAFDGK000000000 | Seep-SRB2 sp. 1 (str. Meg22_1012_Bin_255) |
Desulfomithrium gen. nov. sp. 1 | 2126229 | 85.79 | 0.6 | d__Bacteria; p__Desulfobacterota; c__Dissulfuribacteria; o__Dissulfuribacterales; f__UBA3076; g__UBA3076; s__UBA3076 sp003194485 | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDIH000000000 | Seep-SRB2 sp. 1 (str. Meg22_1214_Bin_80) |
Desulfomithrium gen. nov. sp. 1 | 2269757 | 91.15 | 0.6 | d__Bacteria; p__Desulfobacterota; c__Dissulfuribacteria; o__Dissulfuribacterales; f__UBA3076; g__UBA3076; s__UBA3076 sp003194485 | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDIM000000000 | Seep-SRB2 sp. 1 (str. Meg22_1416_Bin_176) |
Desulfomithrium gen. nov. sp. 1 | 1724888 | 60.53 | 1.98 | d__Bacteria; p__Desulfobacterota; c__Dissulfuribacteria; o__Dissulfuribacterales; f__UBA3076; g__UBA3076; s__UBA3076 sp003194485 | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDIU000000000 | Seep-SRB2 sp. 1 (str. Meg22_1618_Bin_165) |
Desulfomithrium gen. nov. sp. 1 | 1927125 | 76.83 | 2.68 | d__Bacteria; p__Desulfobacterota; c__Dissulfuribacteria; o__Dissulfuribacterales; f__UBA3076; g__UBA3076; s__UBA3076 sp003194485 | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAJSZQ000000000 | Seep-SRB2 sp. 2 (str. FWG173) |
Desulfomithrium gen. nov. sp. 2 | 2393181 | 87.78 | 0.6 | d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales; f__UBA3076;g__UBA3076;s__ | Pescadero Basin, Gulf of California | This study |
| JAJSZR000000000 | Seep-SRB2 sp. 2 (str. FWG174) |
Desulfomithrium gen. nov. sp. 2 | 2622393 | 93.73 | 0.68 | d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales; f__UBA3076;g__UBA3076;s__ | Pescadero Basin, Gulf of California | This study |
| DFBQ00000000 | Seep-SRB2 sp. 3 (str. 002367355) |
Desulfomithrium gen. nov. sp. 3 | 2606474 | 94.03 | 1.98 | d__Bacteria; p__Desulfobacterota; c__Dissulfuribacteria; o__Dissulfuribacterales; f__UBA3076; g__UBA3076; s__UBA3076 sp002367355 | Coal Oil Point, Santa Barbara, California, USA | [44] |
| PQXE00000000 | Seep-SRB2 sp. 4 (str. E20) |
Desulfomithrium gen. nov. sp. 4 | 2549842 | 94.62 | 1.79 | d__Bacteria; p__Desulfobacterota; c__Dissulfuribacteria; o__Dissulfuribacterales; f__UBA3076; g__UBA3076; s__UBA3076 sp003194495 | Marine sediment, Elba, Italy | [24] |
| QNAY00000000 | Seep-SRB2 sp. 5 (str. 003645605) |
Desulfomithrium gen. nov. sp. 5 | 1911994 | 80.95 | 2.13 | d__Bacteria; p__Desulfobacterota; c__Dissulfuribacteria; o__Dissulfuribacterales; f__UBA3076; g__UBA3076; s__UBA3076 sp003645605 | Hydrothermal sediment, Guaymas Basin, Gulf of California | [41] |
| JAFDFS000000000 | Seep-SRB2 sp. 6 (str. Meg22_02_Bin_69) |
Desulfomithrium gen. nov. sp. 6 | 1600510 | 70.11 | 2.7 | d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales; f__UBA3076;g__UBA3076;s__ | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| LQBF00000000 | Seep-SRB2 sp. 7 (str. ML8_D) |
Desulfomithrium gen. nov. sp. 7 | 3527240 | 99.38 | 12.95 | d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales; f__UBA3076;g__UBA3076;s__ | Mahoney Lake, Canada, British Columbia | [42] |
| JAFDGC000000000 | Seep-SRB2 sp. 8 (str. Meg19_1012_Bin_147) |
Desulfomithrium gen. nov. sp. 8 | 2934091 | 90.85 | 1.19 | d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales; f__UBA3076;g__UBA3076;s__ | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDGV000000000 | Seep-SRB2 sp. 8 (str.Meg22_1012_Bin_335) |
Desulfomithrium gen. nov. sp. 8 | 2310472 | 95.49 | 1.19 | d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales; f__UBA3076;g__UBA3076;s__ | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDIE000000000 | Seep-SRB2 sp. 8 (str. Meg22_1214_Bin_60) |
Desulfomithrium gen. nov. sp. 8 | 2351303 | 94.32 | 0.73 | d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales; f__UBA3076;g__UBA3076;s__ | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDIO000000000 | Seep-SRB2 sp. 8 (str. Meg22_1416_Bin_56) | Desulfomithrium gen. nov. sp. 8 | 2557541 | 77.56 | 5.08 | d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales; f__UBA3076;g__UBA3076;s__ | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDIR000000000 | Seep-SRB2 sp. 8 (str. Meg22_1618_Bin_149) | Desulfomithrium gen. nov. sp. 8 | 2785779 | 95.51 | 3.08 | d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales; f__UBA3076;g__UBA3076;s__ | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDLI000000000 | Seep-SRB2 sp. 8 (str. Meg22_46_Bin_87) | Desulfomithrium gen. nov. sp. 8 | 2368215 | 91.41 | 0.15 | d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales; f__UBA3076;g__UBA3076;s__ | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
| JAFDLJ000000000 | Seep-SRB2 sp. 8 (str. Meg22_810_Bin_10) | Desulfomithrium gen. nov. sp. 8 | 2635042 | 91.64 | 1.92 | d__Bacteria;p__Desulfobacterota;c__Dissulfuribacteria;o__Dissulfuribacterales; f__UBA3076;g__UBA3076;s__ | Hydrothermal sediment, Guaymas Basin, Gulf of California | [42] |
*These species are closely related to the syntrophic partner but, they are not known to be partners of ANME.
ANME, anaerobic methanotrophic archaea; SRB, sulfate-reducing bacteria.