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. 2023 Oct 5;17:91. doi: 10.1186/s40246-023-00535-y

Table 1.

Details of all four families with parental mosaicism (pathogenic/likely pathogenic/variant of uncertain significance) in this study

Family Gene Origin Sample Type Variant detected by trio ES with peripheral blood Variant detected by Sanger Variant detected by BDA/BDA-qPCR Variant detected by dPCR/ddPCR Type of Mosaicism
Reference count Variant count Total count VAF (%) Enriched VAF (%) Total chambers/droplets VAF (%)
14 CHD7 Maternal Blood Unknown (ES by third party) No No Not tested Not tested Paternal gonadal mosaicism
Buccal Not tested No No Not tested 10,286  < 0.01
Paternal Blood Unknown (ES by third party) No No Not tested 14,649  < 0.01
Buccal Not tested No No Not tested 14,446  < 0.01
Semen Not tested Yes Yes Not tested 41,644 13.9
15 FLNC Maternal Blood 12 0 12 0.0 No No  < 0.1 16,628  < 0.01 Paternal gonosomal mosaicism
Buccal Not tested No No Not tested 17,538  < 0.01
Paternal Blood 8 2 10 20.0 Yes Yes 12.7 17,905 22.2
Buccal Not tested Yes Yes 8.7 36,218 21.3
Semen Not tested Yes Yes 22.7 17,510 35.9
17 #EYA1 Maternal Blood 24 4 28 14.3 Yes Not tested Not tested 17,284 21.7 Maternal gonosomal mosaicism
Paternal Blood 17 0 17 0.0 No Not tested
18 EBF3 Maternal Blood 117 17 134 12.7 Yes Not tested Not tested 10,203 18.4 Maternal gonosomal mosaicism
Buccal Not tested Yes 12,506 29.6
Paternal Blood 107 0 107 0.0 No Not tested

#Previously reported family. VAF: Variant allele frequency; BDA: blocker displacement amplification; ES: exome sequencing; qPCR: quantitative polymerase chain reaction; dPCR: digital PCR; ddPCR: droplet dPCR