Table 1.

Key resources

Deposited Data	Identifier
Lin et. al. 2022	GEO: GSE165578
CjPCA website	https://cjpca.ninds.nih.gov
Marmoset Brain Mapping	https://marmosetbrainmapping.org/
Software and Algorithms	Identifier
R (v3.6.1 & v4.1.3)	https://cran.r-project.org/bin/
Cellranger (v3.1.0)	https://www.10xgenomics.com/
Spaceranger (v1.2.2)	https://www.10xgenomics.com/
Seurat (v3.2.2 & v4.3.0)	https://github.com/satijalab/seurat
DoubletFinder (v2.0.3)	https://github.com/chris-mcginnis-ucsf/DoubletFinder
SoupX (v1.6.2)	https://github.com/constantAmateur/SoupX
harmony (v0.1.0)	https://github.com/immunogenomics/harmony
monocle3 (v 0.2.0)	https://github.com/cole-trapnell-lab/monocle3
gprofiler2 (v0.2.1)	https://cran.r-project.org/web/packages/gprofiler2/index.html
BayeSpace (v1.10.1)	https://bioconductor.org/packages/3.12/bioc/html/BayesSpace.html
scProportionTest (v0.0.0.9000)	https://github.com/rpolicastro/scProportionTest
CellChat (v1.6.1)	https://github.com/sqjin/CellChat
plotly (v4.10.1)	https://cran.r-project.org/web/packages/plotly/index.html
jpeg (v0.1–10)	https://cran.r-project.org/web/packages/jpeg/index.html
ggseg3d (v1.6.3)	https://cran.r-project.org/web/packages/ggseg3d/index.html
redobj (v0.4.1)	https://cran.r-project.org/web/packages/readobj/index.html
visNetwork (v2.1.2)	https://cran.r-project.org/web/packages/visNetwork/index.html
ggplot2 (v3.4.2)	https://cran.r-project.org/web/packages/ggplot2/index.html
Fiji (v2.9.0/1.53t)	https://imagej.net/Fiji/Downloads