Spontaneous apoptosis |
(−) Samples with low viability (<0.25) present a technical challenge |
(+) Samples with low viability are rescued from spontaneous apoptosis |
Plate-positional effects |
(−) Edge effect: edge wells have systematically lower viabilities |
(+) No edge effect |
Reproducibility |
(+) Good correlation (r = 0.92) |
(+) Good correlation (r = 0.88) |
Microenvironmental effects |
(−) No signals from the microenvironment |
(+) Ex vivo model of the bone marrow microenvironment |
Drug sensitivity |
(+) Drug sensitivity profiles can be used for personalized medicine (citations) |
(++) Drug sensitivity profiles in presence of microenvironment signals |
Drug-gene associations |
(++) Many drug-gene associations are correlated with the clinical outcome |
(+) Directions of drug-gene associations preserved. Lower effect size estimates. Variance reduction enhances some associations |
Experimental complexity |
(+) Easy to handle |
(−) More labor-intense |
Image analysis |
(+) Straightforward |
(−) Requires additional staining or machine learning to separate cancer cells from stromal cells |