REAGENT or RESOURCE	SOURCE	IDENTIFIER
Bacterial and virus strains
Escherichia coli K12 JM109	Promega	Cat#L2005
Biological samples
Diaphorina citri bacteriome tissues	This study	N/A
D. citri body tissues	This study	N/A
Bactericera cockerelli bacteriome tissues	This study	N/A
B. cockerelli body tissues	This study	N/A
Deposited data
BioProject	This study	NCBI BioProject: PRJNA939696
Raw data	This study	NCBI SRA: SRR23641431 to SRR23641440
Experimental models: Organisms/strains
D. citri	USA:CA	N/A
B. cockerelli	USA:CA	N/A
Oligonucleotides
Dcit-wsp-qF/R	This study	See STAR methods section for sequences
Bcoc-wsp-qF/R	This study	See STAR methods section for sequences
Recombinant DNA
pGEM-T-Easy-Dcit-wsp	This study	N/A
pGEM-T-Easy-Bcoc-wsp	This study	N/A
pGEM-T-Easy-ACTB	This study	N/A
pGEM-T-Easy-FORKHEAD	This study	N/A
Software and algorithms
FASTQC	Andrews (2010)81	v.0.11.8
Trimmomatic	Bolger et al. (2014)82	v.0.36
HiSAT	Kim et al. (2015)	v.2.1.0
StringTie	Pertea et al. (2015)84	v.2.2.1
RStudio	R Core Team (2022)85	v.4.2.0
EdgeR	Robinson et al. (2010)86	N/A
BlastKOALA	Kanehisha et al. (2016)	N/A
OrthoVenn2	Xu et al. (2019)92	N/A
GSEA	Subramanian et al. (2005)88	v4.0.0
RAxML-HPC BlackBox	Miller et al. (2010)90	v.8.2.12
Figtree	Rambaut (2018)91	v.1.4.4
ggplot2	Wickham (2016)98	N/A
Other
D. citri reference genome	Carlson et al. (2022)21	GCA_024506315.2
B. cockerelli reference genome	Kwak et al. (2023)22	GCA_024516035.1