Table 1.
Summary of genomes re-identified during this study. See Additonal file 1: Table 1 for the full list of strains analysed during this study.
| Assembly acc | WGS project acc | Current species name | Subgenus | Section | Series | Strain | Submitted name | Note |
|---|---|---|---|---|---|---|---|---|
| GCA_023627405 | JAMAHF01 | Aspergillus ustus | Nidulantes | Usti | Usti | R2504 | Penicillium species | Misidentified (Incorrect genus) |
| GCA_023625675 | JAMAFL01 | Candida species | – | – | – | R2202 | Penicillium species | Misidentified (Incorrect genus) |
| GCA_028826755 | JAPQKH01 | P. adametzioides | Aspergilloides | Sclerotiorum | Adametziorum | IBT30069 | P. angulare | Misidentified |
| GCA_023624315 | JAMACP01 | P. allii-sativi | Penicillium | Chrysogena | Chrysogena | M2201 | P. chrysogenum | Misidentified |
| GCA_023627315 | JAMAFH01 | P. allii-sativi | Penicillium | Chrysogena | Chrysogena | M2202 | P. chrysogenum | Misidentified |
| GCA_025768175 | JAMFOR01 | P. allii-sativi | Penicillium | Chrysogena | Chrysogena | M2203 | P. chrysogenum | Misidentified |
| GCA_003138045 | QAGG01 | P. bialowiezense | Penicillium | Brevicompacta | Brevicompacta | MA6036 | Penicillium species | Identified to genus |
| GCA_005250745 | RFFF02 | P. brevicompactum | Penicillium | Brevicompacta | Brevicompacta | CF01 | Penicillium species | Identified to genus |
| GCA_002072405 | MDDG01 | P. brevistipitatum | Penicillium | Robsamsonia | Robsamsonia | IBT31321 | P. coprophilum | Misidentified |
| GCA_000943765 | JPLQ01 | P. canescens | Penicillium | Canescentia | Canescentia | ATCC48735 | P. capsulatum | Misidentified (wrong section) |
| GCA_000943775 | JPLR01 | P. canescens | Penicillium | Canescentia | Canescentia | LiaoWQ2011 | P. capsulatum | Misidentified (wrong section) |
| GCA_028827535 | JAQJAA01 | P. caprifimosum | Penicillium | Turbata | Turbata | IBT19332 | Penicillium species | Identified to genus |
| GCA_028827425 | JAQJAB01 | P. caprifimosum | Penicillium | Turbata | Turbata | IBT6001 | Penicillium species | Identified to genus |
| GCA_015586035 | JACSPC01 | P. chrysogenum | Penicillium | Chrysogena | Chrysogena | IF3SW-F1 | P. griseoroseum | Synonym |
| GCA_015585885 | JACSOW01 | P. chrysogenum | Penicillium | Chrysogena | Chrysogena | IF7SW-F5 | P. griseoroseum | Synonym |
| GCA_015585865 | JACSOT01 | P. chrysogenum | Penicillium | Chrysogena | Chrysogena | IIF4SW-F4 | P. griseoroseum | Synonym |
| GCA_015585785 | JACSOR01 | P. chrysogenum | Penicillium | Chrysogena | Chrysogena | IIF7SW-F2 | P. dipodomyicola | Misidentified (wrong section) |
| GCA_015585765 | JACSOQ01 | P. chrysogenum | Penicillium | Chrysogena | Chrysogena | IIF7SW-F4 | P. dipodomyicola | Misidentified (wrong section) |
| GCA_028827645 | JAQJAC01 | P. citrinum | Aspergilloides | Citrina | Citrina | IBT29057 | P. hetheringtonii | Misidentified |
| GCA_018340795 | JADDUG01 | P. citrinum | Aspergilloides | Citrina | Citrina | P2648 | P. steckii | Misidentified |
| GCA_003800485 | PUHX02 | P. commune | Penicillium | Fasciculata | Camembertiorum | SPGF15 | Penicillium species | Identified to genus |
| GCA_002369805 | NPFE01 | P. cremeogriseum | Aspergilloides | Lanata-Divaricata | Janthinella | NCIM1366 | P. janthinellum | Misidentified |
| GCA_028828185 | JAQKAP01 | P. cyclopium | Penicillium | Fasciculata | Viridicata | IBT34249 | P. viridicatum | Misidentified |
| GCA_019775275 | JACWGB01 | P. decumbens | Aspergilloides | Exilicaulis | Alutacea | VSABIIIKN | Penicillium species | Identified to genus |
| GCA_019775305 | JACWGC01 | P. decumbens | Aspergilloides | Exilicaulis | Alutacea | VSABIIIKN1 | Penicillium species | Identified to genus |
| GCA_025586815 | JANFQT01 | P. desertorum | Penicillium | Chrysogena | Chrysogena | CGMCC3.5273 | P. glycyrrhizacola | Synonym |
| GCA_023626475 | JAMADV01 | P. ehrlichii | Aspergilloides | Lanata-Divaricata | Janthinella | PG2901 | P. janthinellum | Misidentified |
| GCA_023626455 | JAMADU01 | P. ehrlichii | Aspergilloides | Lanata-Divaricata | Janthinella | PG2902 | P. janthinellum | Misidentified |
| GCA_028828275 | JAQIZY01 | P. frequentans | Aspergilloides | Aspergilloides | Glabra | IBT35677 | P. glabrum | Misidentified |
| GCA_028827865 | JAQIZZ01 | P. frequentans | Aspergilloides | Aspergilloides | Glabra | IBT35679 | P. glabrum | Misidentified |
| GCA_028828865 | JAQJZQ01 | P. fuscum | Aspergilloides | Aspergilloides | Pinetorum | IBT16267 | Penicillium species | Identified to genus |
| GCA_028829675 | JAQKAK01 | P. glabrum | Aspergilloides | Aspergilloides | Glabra | IBT21756 | P. tannophilum | Synonym |
| GCA_014839855 | WIWU01 | P. hepuense | Aspergilloides | Lanata-Divaricata | Oxalica | 2HH | P. ucsense | Misidentified |
| GCA_014839625 | WIWV01 | P. hepuense | Aspergilloides | Lanata-Divaricata | Oxalica | S1M29 | P. ucsense | Misidentified |
| GCA_028827775 | JAQJAM01 | P. herquei | Aspergilloides | Sclerotiorum | Herqueorum | IBT13176 | P. malachiteum | Misidentified |
| GCA_028828335 | JAQJAN01 | P. herquei | Aspergilloides | Sclerotiorum | Herqueorum | IBT17514 | P. malachiteum | Misidentified |
| GCA_003852855 | PZKB01 | P. janthinellum | Aspergilloides | Lanata-Divaricata | Janthinella | MT2MMC2018 | Penicillium species | Identified to genus |
| GCA_028828245 | JAQJAG01 | P. kananaskense | Aspergilloides | Aspergilloides | Livida | IBT13676 | P. lividum | Misidentified |
| GCA_028826875 | JAPQKO01 | P. malacaense | Aspergilloides | Cinnamopurpurea | Idahoensia | IBT21917 | P. capsulatum | Misidentified (wrong section) |
| GCA_028828875 | JAQJZR01 | P. malacaense | Aspergilloides | Cinnamopurpurea | Idahoensia | IBT29712 | P. capsulatum | Misidentified (wrong section) |
| GCA_028974045 | JAPQKQ01 | P. mali-pumilae | Penicillium | Fasciculata | Corymbifera | IBT20477 | Penicillium cf viridicatum | Misidentified |
| GCA_002916455 | PKQL01 | P. nalgiovense | Penicillium | Chrysogena | Chrysogena | CF05 | Penicillium species | Identified to genus |
| GCA_029142755 | JARFLT01 | P. olsonii | Penicillium | Brevicompacta | Olsoniorum | MT45 | Penicillium species | Identified to genus |
| GCA_029142805 | JARFLS01 | P. olsonii | Penicillium | Brevicompacta | Olsoniorum | WT45 | Penicillium species | Identified to genus |
| GCA_023626495 | JAMAHB01 | P. oxalicum | Aspergilloides | Lanata-Divaricata | Oxalica | D2Mb | Penicillium species | Identified to genus |
| GCA_023626535 | JAMAHD01 | P. oxalicum | Aspergilloides | Lanata-Divaricata | Oxalica | PH3801 | Penicillium species | Identified to genus |
| GCA_023626555 | JAMAHA01 | P. oxalicum | Aspergilloides | Lanata-Divaricata | Oxalica | R1202D | Penicillium species | Identified to genus |
| GCA_025768115 | JAMFOT01 | P. oxalicum | Aspergilloides | Lanata-Divaricata | Oxalica | R2202 | Penicillium species | Identified to genus |
| GCA_023626515 | JAMAHC01 | P. oxalicum | Aspergilloides | Lanata-Divaricata | Oxalica | S1126A | Penicillium species | Identified to genus |
| GCA_023626615 | JAMAHE01 | P. oxalicum | Aspergilloides | Lanata-Divaricata | Oxalica | S1316 | Penicillium species | Identified to genus |
| GCA_022985105 | JAAVMA01 | P. rotoruae | Aspergilloides | Lanata-Divaricata | Rolfsiorum | RLS11 | P. ochrochloron | Misidentified |
| GCA_023626975 | JAMAEP01 | P. rubens | Penicillium | Chrysogena | Chrysogena | 2NP912A | P. chrysogenum | Misidentified |
| GCA_023626635 | JAMAEB01 | P. rubens | Penicillium | Chrysogena | Chrysogena | B20-02 | P. chrysogenum | Misidentified |
| GCA_023626855 | JAMAEG01 | P. rubens | Penicillium | Chrysogena | Chrysogena | B3902 | P. chrysogenum | Misidentified |
| GCA_028891605 | JAKRWH01 | P. rubens | Penicillium | Chrysogena | Chrysogena | BIONCL16 | P. chrysogenum | Misidentified |
| GCA_020284065 | JAILXA01 | P. rubens | Penicillium | Chrysogena | Chrysogena | CBS140575 | P. fimorum | Misidentified (wrong section) |
| GCA_025590035 | JANFQV01 | P. rubens | Penicillium | Chrysogena | Chrysogena | CGMCC3.5265 | P. chrysogenum | Misidentified |
| GCA_023627295 | JAMAFF01 | P. rubens | Penicillium | Chrysogena | Chrysogena | F30-04 | P. chrysogenum | Misidentified |
| GCA_015586305 | JADBGY01 | P. rubens | Penicillium | Chrysogena | Chrysogena | F32F4F | P. chrysogenum | Misidentified |
| GCA_015586295 | JADBGZ01 | P. rubens | Penicillium | Chrysogena | Chrysogena | F32F5F | P. chrysogenum | Misidentified |
| GCA_002000375 | MUXA01 | P. rubens | Penicillium | Chrysogena | Chrysogena | HKF2 | Penicillium species | Identified to genus |
| GCA_002080375 | MWKT01 | P. rubens | Penicillium | Chrysogena | Chrysogena | HKF42 | P. chrysogenum | Misidentified |
| GCA_000801355 | JPDR01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IB08-921 | P. chrysogenum | Misidentified |
| GCA_015586425 | JADBGS01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IF1SG-B2 | P. chrysogenum | Misidentified |
| GCA_015586135 | JACSPG01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IF1SW-F3 | P. chrysogenum | Misidentified |
| GCA_015586415 | JADBGT01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IF2SG-B2 | P. chrysogenum | Misidentified |
| GCA_015586075 | JACSPE01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IF2SW-F4 | P. chrysogenum | Misidentified |
| GCA_015586055 | JACSPD01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IF2SW-F5 | P. chrysogenum | Misidentified |
| GCA_015586015 | JACSPB01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IF3SW-F3 | P. chrysogenum | Misidentified |
| GCA_015586395 | JADBGU01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IF4SG-B1 | P. chrysogenum | Misidentified |
| GCA_015585965 | JACSPA01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IF4SW-F1 | P. chrysogenum | Misidentified |
| GCA_015585955 | JACSOZ01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IF7SW-F1 | P. chrysogenum | Misidentified |
| GCA_015585975 | JACSOY01 | P. rubens | Penicillium | C hrysogena | Chrysogena | IF7SW-F3 | P. dipodomyicola | Misidentified (wrong section) |
| GCA_015585905 | JACSOV01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IIF1SW-F3 | P. polonicum | Misidentified (wrong section) |
| GCA_015585875 | JACSOU01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IIF3SW-F2 | P. chrysogenum | Misidentified |
| GCA_015585855 | JACTVK01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IIF4SW-F3 | P. chrysogenum | Misidentified |
| GCA_015585735 | JACSON01 | P. rubens | Penicillium | Chrysogena | Chrysogena | IIF8SW-F4 | P. chrysogenum | Misidentified |
| GCA_023626815 | JAMAEH01 | P. rubens | Penicillium | Chrysogena | Chrysogena | M20-01 | P. chrysogenum | Misidentified |
| GCA_023627355 | JAMAFJ01 | P. rubens | Penicillium | Chrysogena | Chrysogena | M20-02 | P. chrysogenum | Misidentified |
| GCA_023627035 | JAMAET01 | P. rubens | Penicillium | Chrysogena | Chrysogena | M30-01 | P. chrysogenum | Misidentified |
| GCA_003138025 | QAGI01 | P. rubens | Penicillium | Chrysogena | Chrysogena | MA6040 | Penicillium species | Identified to genus |
| GCA_000523475 | APKG01 | P. rubens | Penicillium | Chrysogena | Chrysogena | NCPC10086 | P. chrysogenum | Misidentified |
| GCA_027569345 | JAPDEX01 | P. rubens | Penicillium | Chrysogena | Chrysogena | NRRL792 | P. chrysogenum | Misidentified |
| GCA_023624235 | JAMACS01 | P. rubens | Penicillium | Chrysogena | Chrysogena | P20-02 | P. chrysogenum | Misidentified |
| GCA_023624435 | JAMACH01 | P. rubens | Penicillium | Chrysogena | Chrysogena | P20-04 | P. chrysogenum | Misidentified |
| GCA_000710275 | JMSF01 | P. rubens | Penicillium | Chrysogena | Chrysogena | P2niaD18 | P. chrysogenum | Misidentified |
| GCA_023624455 | JAMACI01 | P. rubens | Penicillium | Chrysogena | Chrysogena | P30-11 | P. chrysogenum | Misidentified |
| GCA_023626755 | JAMAEF01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PA3101 | P. chrysogenum | Misidentified |
| GCA_023626715 | JAMAEC01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PB20-03 | P. chrysogenum | Misidentified |
| GCA_025768475 | JAMFOQ01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PB20-04 | P. chrysogenum | Misidentified |
| GCA_023624375 | JAMACL01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PB3102 | P. chrysogenum | Misidentified |
| GCA_023626675 | JAMAEA01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PB3103 | P. chrysogenum | Misidentified |
| GCA_023627015 | JAMAES01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PDH20-03 | P. chrysogenum | Misidentified |
| GCA_023626995 | JAMAER01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PDH20-04 | P. chrysogenum | Misidentified |
| GCA_023626795 | JAMAEJ01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PF2508S | P. chrysogenum | Misidentified |
| GCA_023624355 | JAMACM01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PF3401 | P. chrysogenum | Misidentified |
| GCA_023626695 | JAMAED01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PH4103 | P. chrysogenum | Misidentified |
| GCA_023627055 | JAMAEU01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PK3604 | P. chrysogenum | Misidentified |
| GCA_023624415 | JAMACJ01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PL40-01 | P. chrysogenum | Misidentified |
| GCA_023624255 | JAMACQ01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PM3404 | P. chrysogenum | Misidentified |
| GCA_023626595 | JAMADY01 | P. rubens | Penicillium | Chrysogena | Chrysogena | PYS3203 | P. chrysogenum | Misidentified |
| GCA_023624295 | JAMACO01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R1210 | P. chrysogenum | Misidentified |
| GCA_023626775 | JAMAEI01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R1211B | P. chrysogenum | Misidentified |
| GCA_023627175 | JAMAFB01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R13B | P. chrysogenum | Misidentified |
| GCA_023626835 | JAMAEK01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R20-04 | P. chrysogenum | Misidentified |
| GCA_023627135 | JAMAEY01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R20-05 | P. chrysogenum | Misidentified |
| GCA_023624395 | JAMACK01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R20-08 | P. chrysogenum | Misidentified |
| GCA_023624165 | JAMADX01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R2501 | P. chrysogenum | Misidentified |
| GCA_023624185 | JAMACT01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R3104 | P. chrysogenum | Misidentified |
| GCA_023626915 | JAMAEN01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R3301 | P. chrysogenum | Misidentified |
| GCA_023627275 | JAMAFG01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R3406 | P. chrysogenum | Misidentified |
| GCA_023624275 | JAMACR01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R4101 | P. chrysogenum | Misidentified |
| GCA_023624335 | JAMACN01 | P. rubens | Penicillium | Chrysogena | Chrysogena | R4403 | P. chrysogenum | Misidentified |
| GCA_023626935 | JAMAEO01 | P. rubens | Penicillium | Chrysogena | Chrysogena | S1301 | P. chrysogenum | Misidentified |
| GCA_023626955 | JAMAEQ01 | P. rubens | Penicillium | Chrysogena | Chrysogena | S1302 | P. chrysogenum | Misidentified |
| GCA_023627335 | JAMAFI01 | P. rubens | Penicillium | Chrysogena | Chrysogena | S20-02 | P. chrysogenum | Misidentified |
| GCA_023626875 | JAMAEL01 | P. rubens | Penicillium | Chrysogena | Chrysogena | S3404 | P. chrysogenum | Misidentified |
| GCA_023627095 | JAMAEV01 | P. rubens | Penicillium | Chrysogena | Chrysogena | S3406 | P. chrysogenum | Misidentified |
| GCA_023627115 | JAMAEX01 | P. rubens | Penicillium | Chrysogena | Chrysogena | S40-01 | P. chrysogenum | Misidentified |
| GCA_019828795 | JACVQW01 | P. rubens | Penicillium | Chrysogena | Chrysogena | SN302OCP1 | P. fimorum | Misidentified (wrong section) |
| GCA_019827435 | JACVQT01 | P. rubens | Penicillium | Chrysogena | Chrysogena | SN302OCR3 | P. fimorum | Misidentified (wrong section) |
| GCA_023627235 | JAMAFE01 | P. rubens | Penicillium | Chrysogena | Chrysogena | X20-07 | P. chrysogenum | Misidentified |
| GCA_023627075 | JAMAEW01 | P. rubens | Penicillium | Chrysogena | Chrysogena | Y1301 | P. chrysogenum | Misidentified |
| GCA_025768145 | JAMFOS01 | P. rubens | Penicillium | Chrysogena | Chrysogena | Y3303 | P. chrysogenum | Misidentified |
| GCA_023624135 | JAMADW01 | P. rubens | Penicillium | Chrysogena | Chrysogena | Y40-02 | P. chrysogenum | Misidentified |
| GCA_028828895 | JAQKAT01 | P. rudallense | Aspergilloides | Aspergilloides | Glabra | IBT35674 | Penicillium species | Identified to genus |
| GCA_019775415 | JACWFT01 | P. rudallense | Aspergilloides | Aspergilloides | Glabra | VSIDKN | Penicillium species | Identified to genus |
| GCA_019775465 | JACWFS01 | P. rudallense | Aspergilloides | Aspergilloides | Glabra | VSIDKN3 | Penicillium species | Identified to genus |
| GCA_027569595 | JAPDFJ01 | P. sanguifluum | Aspergilloides | Citrina | Roseopurpurea | G339 | Penicillium species | Identified to genus |
| GCA_027569895 | JAPDLA01 | P. silybi | Aspergilloides | Exilicaulis | Restricta | G342 | Penicillium species | Identified to genus |
| GCA_013138035 | JAASRZ01 | P. solitum | Penicillium | Fasciculata | Camembertiorum | 12 | Penicillium species | Identified to genus |
| GCA_028828285 | JAQJAL01 | P. solitum | Penicillium | Fasciculata | Camembertiorum | IBT35410 | P. majusculum | Synonym |
| GCA_003800495 | PUXE02 | P. solitum | Penicillium | Fasciculata | Camembertiorum | SPGF1 | Penicillium species | Identified to genus |
| GCA_019804565 | JAETFV01 | P. solitum | Penicillium | Fasciculata | Camembertiorum | VSIIIDKN3.2 | P. robsamsonii | Misidentified (wrong section) |
| GCA_028828935 | JAQJZS01 | P. velutinum | Aspergilloides | Exilicaulis | Lapidosa | IBT18751 | Penicillium species | Identified to genus |
| GCA_028828825 | JAQJZP01 | P. yarmokense | Penicillium | Canescentia | Canescentia | IBT19259 | P. canescens | Misidentified |
| GCA_028827225 | JAPZBW01 | Penicillium sp. nov. cyclopium | Penicillium | Fasciculata | Viridicata | IBT12396 | Penicillium species | Undescribed species |
| GCA_028828675 | JAQJZK01 | Penicillium sp. nov. umkohba | Aspergilloides | Sclerotiorum | Herqueorum | IBT29812 | P. herquei | Undescribed species |
| GCA_011750695 | WTTZ01 | Talaromyces minnesotensis | – | Trachyspermi | – | OUCMDZ-019 | Penicillium species | Misidentified (Incorrect genus) |
| GCA_002382855 | NPFK01 | Talaromyces pinophilus | – | Talaromyces | – | CL100 | P. occitanis | Misidentified (Incorrect genus) |
| GCA_002382835 | NPFJ01 | Talaromyces pinophilus | – | Talaromyces | – | CT1 | P. occitanis | Misidentified (Incorrect genus) |