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. 2023 Oct 8;85(11):111. doi: 10.1007/s11538-023-01214-8

Table 1.

Parameter values used across all simulations

Parameter Description Model(s) Value Units
η Drag coefficient All 1.0 CM h-1
Δt Time step All 0.001 h
μ Elastic interaction constant OS 50.0 CM h-2
Rmat Mature cell radius OS 0.5 CD
ρ Decay in attractive force OS 5.0
rmax(OSR) Force cut-off length OS (repulsion) 1.0 CD
rmax(OSS) Force cut-off length OS (short-range) 1.5 CD
rmax(OSL) Force cut-off length OS (long-range) 2.0 CD
κ Spring constant VT 50.0 CM h-2
rmax(VTB) Force cut-off length VT (bounded) 1.5 CD
Amin(VTG) Area threshold for ghost node removal VT (ghosts) 0.4 CD2
α Area deformation coefficient VM 50.0 CM h-2 CD-2
β Membrane tension coefficient VM 1.0 CM h-2
Atarget Cell target area VM Varies CD2
γcell,cell Cell-cell adhesion coefficient for cells of the same type VM 1.0 CM CD h-2
γcell,boundary Cell-boundary adhesion coefficient VM 2.0 CM CD h-2
dr Cell rearrangement threshold VM 0.01 CD
Amin Cell volume removal threshold VM 0.001 CD2
dmax(VMC) Boundary node removal threshold VM (curved) 0.1 CD
dmin(VMC) Boundary node addition threshold VM (curved) 0.025 CD

Parameter values sourced from Pathmanathan et al. (2009) and Fletcher et al. (2013), except for boundary specific values, rearrangement thresholds and adhesion between cells and free space in the VM