Table 3.

P-values calculated by statistical testing on the short read and long read data sets, respectively. MANOVA tests were run all against all, while the t-tests where run one against one utilizing Bonferroni compensation for multiple testing. Values where no significant p-value was calculated (p < 0.05) are shown in bold.

Category	Short Read				Long Read
	MANOVA	t-Test			MANOVA	t-Test
	All vs. All	L3 vs. L2	L1 vs. L2	L1 vs. L3	All vs. All	L4 vs. L2	L1 vs. L2	L1 vs. L4
Read Length	1.2 e−21	2.8 e−03	4.4 e−21	9.3 e−21	5.5 e−05	3.1 e−03	1.3e−01	4.5 e−05
Read Quality	4.4 e−24	8.9 e−22	3.9 e−24	2.1 e−16	1.5 e−21	2.7 e−16	4.6 e−18	9.8 e−22
Alignment Rate	3.6 e−13	2.4 e−13	3.5 e−10	1.2 e−07	5.0 e−06	1.8 e−05	1.8 e−05	1.0e+00
Alignment Ratio	6.3 e−18	1.8 e−13	3.9 e−18	7.3 e−14	1.1 e−03	1.1 e−02	8.6 e−01	1.2 e−03
Coverage Ratio	4.6 e−08	1.1 e−07	4.2 e−07	9.5 e−01	6.3 e−01	1.0 e+00	1.0 e+00	1.0 e+00
Coverage IQR	2.2 e−04	4.4 e−01	4.5 e−03	2.2 e−04	3.0 e−09	1.4 e−07	2.1 e−02	3.5 e−09
RMRC	4.7 e−15	4.7 e−07	4.7 e−15	5.2 e−13	1.2 e−03	1.2 e−02	9.0 e−01	1.3e−03
GMO 0.1% Detection	8.7e−01	1.0 e+00	1.0 e+00	1.0 e+00	2.9 e−01	4.0 e−01	1.0 e+00	8.0 e−01
GMO 1.0% Detection	2.1 e−01	1.0 e+00	2.5 e−01	8.9 e−01	3.0 e−01	6.8 e−01	4.5 e−01	1.0 e+00