REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Anti-IGF1R | Cell Signaling | Cat#9750;RRID:AB_10950969 |
Anti-HexB | Abcam | Cat#ab140649;RRID:AB_3065101 |
Anti-GAPDH | Millipore Sigma | Cat#MAB374;RRID:AB_2107445 |
Bacterial and virus strains | ||
E.coli DH5-α | New England Bioscience | Cat# C2987I |
Chemicals, peptides, and recombinant proteins | ||
AgeI-HF | New England Biolabs | Cat# R3552S |
KpnI-HF | New England Biolabs | Cat# R3142S |
CutSmart Buffer | New England Biolabs | Cat# B7204 actually replaced by Cat# B6004S |
QIAquick gel extraction kit | QIAGEN | Cat# 28706 |
In-Fusion Cloning | TakaraBio Ltd | Cat# 638947 |
Kifunensine | Cayman Chemical | Cat# 109944-15-2 |
Anthranilic Acid | Sigma-Aldrich | Cat# A89855 |
MORPHEUS Crystallisation Screen | Molecular Dimensions | Cat# MD1–47 |
HEPES | Sigma-Aldrich | Cat# H3375 |
Imidazole | Honeywell Fluka | Cat# 56750 |
Deposited data | ||
Python code | This paper | https://doi.org/10.5281/zenodo.8305097 |
CtUGGTGT24 | This paper | PDB ID 7ZKC |
U2FCtUGGTGT24 | This paper | PDB ID 7ZLU |
5M−8OH−QCtUGGTGT24 | This paper | PDB ID 7ZLL |
Experimental models: Cell lines | ||
HEK FreeStyleTM 293F cells | ThermoFisher Scientific | Cat# R79007 |
HEK293-EBNA1-6E ALG6-/- | Adams et al.48 | |
HEK293-EBNA1-6E ALG6/UGGT1-/- | Adams et al.48 | |
HEK293-EBNA1-6E ALG6/UGGT2-/- | Adams et al.48 | |
HEK293-EBNA1-6E ALG6/UGGT1/2-/- | Adams et al.48 | |
Oligonucleotides | ||
OPPF UGGT1 Fwd gcgtagctgaaaccggc GACTCAAAAGCCATTACAACCTCTCT |
Eurofins Scientific | NA |
OPPF UGGT1 Rev gtgatggtgatgttt TTTCTGAGGACCTTCTCGGCTTGG |
Eurofins Scientific | NA |
Recombinant DNA | ||
UGGT1-pUC57 | Genscript | NA |
pOPINTTGneo:hUGGT1 plasmid | This paper | NA |
Software and algorithms | ||
autoPROC | Vonrhein et al.77 | Version 1.0.5 |
Coot | Emsley et al.78 | Version 0.9 |
BUSTER | Blanc et al.79 | Version 2.10.3 |
GLYCAM-web | Singh et al.,80 | Version 1.0 |
AutoDock-Bias | Arcon et al.,81 | Version 1.0 |
AutoDock4 | Morris et al.,82 | Version 4.0 |