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. 2023 Sep 27;26(10):108032. doi: 10.1016/j.isci.2023.108032
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-M13 g3p monoclonal antibody New England BioLabs Cat#E8033; RRID:AB_1559734
HRP-conjugated IgG goat anti-mouse IgG Jackson Cat#115-035-166; RRID:AB_2338511

Bacterial and virus strains

E. coli Tg1 DSMZ 6056
E. coli DH5α DSMZ 6897
Acinetobacter baumannii ATCC 19606 American Type Culture Collection 19606
Pseudomonas aeruginosa PA14 DSMZ 19882
Staphylococcus aureus ATCC 29213 American Type Culture Collection 29213
M13KO7 Helper Phage New England BioLabs NO315S
Hyperphage M13 KO7ΔpIII PROGEN PRHYPE

Chemicals, peptides, and recombinant proteins

Rose Bengal (RB) Merck 330000
EDC Merck 03450
Tetrazolium Violet Merck T0138
NHS Merck 130672
ABMDMA Merck 75068
Amplex Red Merck 90101
HRP Merck P6782

Critical commercial assays

PowerUp™ SYBR™ Green Master Mix for qPCR Thermo Fisher Scientific A25742
LIVE/DEAD™ BacLight™ Bacterial Viability Kit Thermo Fisher Scientific L7007

Deposited data

pPK_LPS This study GenBank: OQ803482
pPKC20 This study GenBank: OQ803483
M13KO7Δg3pΔoriF1 This study GenBank: OQ803484
Plasmids and phagemids
pComb3XSS Addgene 63890
pPK_LPS This study GenBank: OQ803482
pPK_C20 This study GenBank: OQ803483
M13KO7Δg3pΔoriF1 This study GenBank: OQ803484

Oligonucleotides

Primer: forward amplification C20 (AD251)
GTTTTGAGCTCCAGGTGCAG
This study N/A
Primer: reverse amplification C20 (AD252)
GTTTTACTAGTACTAACGGTAACCTGG
This study N/A
Primer: forward amplification Li005 (AD300)
CAAAAACTATTCGAGCTCGATTAGCAGCATTCGTGCGTGCA
This study N/A
Primer: reverse amplification Li005 (AD301)
CTAGTGCACGCACGAATGCTGCTAA
TCGAGCTCGAATAGTTTTTGAGCT
This study N/A
Primer: forward M13 F1ori (AD046)
AGGCTGCACCGGTGCGTCAG
This study N/A
Primer: reverse M13 F1ori (AD047)
ACACCCGCCGCGCTTAATGCG
This study N/A
Primer: forward qPCR (AD211)
TCCGGCCTTGCTAATGGTAA
This study N/A
Primer: reverse qPCR (AD212)
CGCAAAGACACCACGGAATA
This study N/A

Software and algorithms

BLAST https://blast.ncbi.nlm.nih.gov/BlastAlign.cgi v 2.6.0
MUSCLE https://www.ebi.ac.uk/Tools/msa/muscle/ v 3.8.31
ImageJ GitHub v 1.43t
NanoScope Analysis Bruker corporation v 1.80
MATLAB Mathworks v 9.7 R2019b
CytExpert Beckman v 2.4
FlowJo BD Biosciences v 10
Prism GraphPad v 10