Table 1. Sample metadata and sequencing statistics for Duque de Caxias samples.

Sample ID	NCBI accession	Collection date	RT-qPCR Ct	Number of reads	Average depth	Genome coverage (%)
10	OP312936	2017-07-26	23.55	634,418	2582.12	85.84
53	OP312937	2018-03-01	19.45	738,782	4041.52	97.24
57	OP312938	2018-03-08	18.97	1,311,212	10039	98.00
66	OP312939	2018-03-15	14.73	624,422	3281.5	94.34
71	OP312940	2018-03-19	18.78	900,426	3051.64	70.50
79	OP312941	2018-03-22	17.08	924,090	4257.63	95.15
83	OP312942	2018-03-27	19.84	565,152	4016.5	96.19
89	OP312943	2018-03-29	20.08	1,520,304	7710.58	94.39
92	OP312944	2018-03-29	19.19	1,009,462	5340.61	97.68
97	OP312945	2018-04-02	19.35	1,159,296	5811.29	96.74
99	OP312946	2018-04-02	19.91	2,310,894	5509.86	84.85
101	OP312947	2018-04-02	24.94	6,875,476	45036.2	95.21
107	OP312948	2018-04-04	19.57	841,146	2703.55	84.18
110	OP312949	2018-04-05	20.46	1,365,558	3543.14	78.29
114	OP312950	2018-04-05	20.04	1,557,664	6901.02	93.02
116	OP312951	2018-04-05	19.62	663,888	3471.67	93.19
117	OP312952	2018-04-05	23.45	876,300	5417.87	90.16
120	OP312953	2018-04-16	18.07	765,232	2285.81	94.73
126	OP312954	2018-04-17	23.02	1,405,840	6905.76	87.42
128	OP312955	2018-04-19	21.72	1,365,992	4532.91	84.24
130	OP312956	2018-04-19	18.47	1,038,668	4913.46	94.99
134	OP312957	2018-04-19	22.77	2,133,788	10443.2	94.98
143	OP312958	2018-04-30	23.22	1,518,024	7322.5	91.43
149	OP312959	2018-04-30	23.77	1,034,102	1806.96	85.10
152	OP312960	2018-05-03	24.85	2,261,360	9137.28	87.06
155	OP312961	2018-05-03	24.84	1,339,770	6698.01	85.11
157	OP312962	2018-05-07	21.03	1,778,388	8387.42	89.23
159	OP312963	2018-05-07	24.37	628,560	2628.08	90.56
161	OP312964	2018-05-07	24.73	1,182,780	3850.23	89.45
165	OP312965	2018-05-09	18.83	1,150,356	6482.64	96.64
166	OP312966	2018-05-09	22.01	1,467,544	7224.4	86.22
170	OP312967	2018-05-14	24.08	1,048,464	4201.88	91.86
174	OP312968	2018-05-17	14.76	1,092,190	4108.37	95.44
181	OP312969	2018-05-23	18.75	816,186	4507.98	97.82