REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial and virus strains | ||
Lenti-EV-GFP-VSVG | University of Michigan Vector Core | Lenti-EV-GFP-VSVG |
Chemicals, peptides, and recombinant proteins | ||
CellAdhere Laminin-521 | STEMCELL Technologies | Cat#77003 |
CloneR2 | STEMCELL Technologies | Cat#100-0691 |
Geltrex LDEV-Free, hESC-Qualified, Reduced growth factor basement membrane matrix | Thermo Fisher Scientific | Cat#A1413302 |
AccuGENE 0.5 M EDTA Solution | Lonza | Cat#51201 |
Dulbecco’s phosphate-buffered saline (DPBS) no calcium, no magnesium | Thermo Fisher Scientific | Cat#14190144 |
Dulbecco’s phosphate-buffered saline (DPBS) calcium, magnesium | Thermo Fisher Scientific | Cat#14040133 |
Ambion Nuclease Free Water | Invitrogen | Cat#AM9930 |
Critical commercial assays | ||
Q5 High-Fidelity 2× Master Mix | New England Biolabs | Cat#M0492S |
QIAquick PCR Purification Kit | QIAGEN | Cat#28104 |
DNeasy Blood & Tissue Kit | QIAGEN | Cat#69504 |
Infinium CoreExome-24 v1.4 Kit | Illumina Inc | Cat#20039222 |
TrueCut Cas9 Protein v2 | Invitrogen | Cat#A36498 |
Mirus Bio TransIT-LT1 Transfection Reagent | Mirus Bio LLC | Cat#MIR2300 |
Precision gRNA Synthesis Kit | Thermo Fisher Scientific | Cat#A29377 |
Experimental models: Cell lines | ||
WA01 (H1) Male Embryonic Stem Cells | WiCell | Cat#WA01 |
WA09 (H9) Female Embryonic Stem Cells | WiCell | Cat#WA09 |
UM4-6 | Haenfler et al.6 | N/A |
UM139-2 | Haenfler et al.6 | N/A |
CON2E | Tidball et al.5 | N/A |
SCN1B-4A | This paper | Louis Dang unpublished cell line |
SCN1B-6B | This paper | Louis Dang unpublished cell line |
Oligonucleotides | ||
POGZ sgRNA sequence 1: TCGCTCCTCACTCTACTCTG | Deng et al.1 | N/A |
POGZ sgRNA sequence 2: CCTCCTCACATTCCATGAAC | Deng et al.1 | N/A |
Primer to confirm sgRNA1 editing: POGZ Primer Forward 1: GCCTAGTACCTGGTGCCTCA | Deng et al.1 | N/A |
Primer to confirm sgRNA1 editing: POGZ Primer Reverse1: GGCCTCTCAGTTGTTCACTTC | Deng et al.1 | N/A |
Primer to confirm sgRNA2 editing: POGZ Primer Forward 2: TCAGAAGAGCTTTTGTTACCTGTG | Deng et al.1 | N/A |
Primer to confirm sgRNA2 editing: POGZ Primer Reverse 2: CCAAGGAGGTAGGTTACCAATG |
Deng et al.1 | N/A |
Recombinant DNA | ||
pSpCas9(BB)-2A-Puro V2.0 (PX459) | Ran et al.2 | Addgene plasmid #62988 |
AAVS1-TALEN-L | Gonzalez et al.3 | Addgene plasmid #59025 |
AAVS1-TALEN-R | Gonzalez et al.3 | Addgene plasmid #59026 |
AAVS1-CAG-hrGFP | Qian et al.4 | Addgene plasmid #52344 |
Software and algorithms | ||
ICE CRISPR Analysis Tool | Synthego | https://www.synthego.com/products/bioinformatics/crispr-analysis |
Genome Viewer v2.0 | Illumina | https://support.illumina.com/array/array_software/genomestudio/downloads.html |
Other | ||
Accutase Cell Detachment Solution | Innovative Cell Technologies | Cat#AT104 |
Dulbecco’s Modified Eagle Medium/ Nutrient Mixture F-12 (DMEM/F-12), HEPES | Thermo Fisher Scientific | Cat#11330032 |
mTeSR Plus | STEMCELL Technologies | Cat#100-0276 |
Biological Safety Cabinet model: 1300 series A2 | Thermo Fisher Scientific | Cat#1323TS |
Horizontal Laminar Flow Cabinet model: HeraGuard ECO | Thermo Fisher Scientific | Cat#51029701 |
CO2 incubator model: HERAcell vios 160i | Thermo Fisher Scientific | Cat#51033557 |
Inverted fluorescence cell culture microscope model: CKX53F3 | Olympus | Cat#CKX53 |
EVOS FL Auto Imaging System | Thermo Fisher Scientific | Cat#EVOSFL |
Countess 3 Automated Cell counter | Invitrogen | Cat# A49865 |
The STRIPPER Micropipetter with Free Standing Comfort Grip | Cooper surgical | Cat#MXL3-STR-CGR https://fertility.coopersurgical.com/micropipettes/the-stripper/ |
Fisherbrand Imetera Diamond Scribes | Fisher Scientific | Cat#08-675 https://www.fishersci.com/shop/products/imetra-diamond-scribes/08675#?keyword=08-675 |
Borosilicate glass capillary 1 mm × 0.58 cm × 10 cm | Sutter Instrument | Cat#B100-58-10 https://www.sutter.com/MICROPIPETTE/glass.html |
Micropipette puller model: P-87 | Sutter Instrument | Cat#P-87 https://www.sutter.com/MICROPIPETTE/p-97.html |
Microforge Model: MF2 | Narishige | Cat#MF2 https://products.narishige-group.com/group1/MF2/pipette/english.html |
35 mm Petri dish | Fisher Scientific | Cat#08-757-100A |
Falcon Standard Tissue Culture Dishes | Fisher Scientific | Cat#08-772E |
96-well cell culture, flat bottom microplate | Fisher Scientific | Cat#08-772-2C |
Sterile 15-mL centrifuge tubes | ASI Scientific | Cat#CN50601 |
1-Channel mechanical pipette | Fisher Scientific | F123600TG, F123602G |
Sterile micropipette tips | Fisher Scientific | Cat#02-707-432, 1111-2721 |