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. Author manuscript; available in PMC: 2023 Oct 12.
Published in final edited form as: Cell Rep. 2023 Jun 1;42(6):112577. doi: 10.1016/j.celrep.2023.112577

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
anti-TCAB1 rabbit polyclonal antibody Proteintech 14761-1-AP
anti-TCAB1 rabbit polyclonal antibody Abcam ab224444
anti-TCAB1 rabbit polyclonal antibody Novus Biologicals NB100-68252
anti-GAR1 rabbit polyclonal antibody Proteintech 11711-1-AP
anti-Coilin mouse monoclonal antibody Abcam ab87913
anti-Dyskerin mouse monoclonal antibody Santa Cruz Biotech. sc-373956
anti-TERT recombinant rabbit monoclonal antibody Abcam ab30202
anti-TERT sheep polyclonal antibody Scott Cohen Abx120550
anti-Fibrillarin mouse monoclonal antibody Novus Biologicals NB300-269
anti-Lamin B1 rabbit polyclonal antibody Proteintech 12987-1-AP
anti-Rabbit Cy3 secondary antibody Invitrogen A-10520
anti-Mouse Alexa 647 secondary antibody Invitrogen A-21235
anti-Mouse Alexa 405 secondary antibody Invitrogen A-31553
anti-Mouse HRP Invitrogen A-31430
anti-Rabbit HRP Invitrogen A-31460
Chemicals, peptides, and recombinant proteins
JF646 HaloTag Ligand Grimm et al.35 N/A
Prolong Diamond Antifade Mountant Life Technologies P36970
Thymidine Sigma T1895
Puromycin 10 mg/mL Gibco A1113803
Lipofectamine 2000 Invitrogen 11668019
dGTP [α-32P] 3000 Ci/mmol 10 mCi/mL Perkin Elmer BLU514H250UC
TERT peptide ARPAEEATSLEGALSGTRH Cohen et al.36 N/A
Dextrane sulfate Sigma D8906-10G
E. coli tRNA Sigma 10109541001
Salmon Sperm DNA Invitrogen 15632011
Vanadyl Ribonucleoside Complexes Sigma R3380-5ML
CHAPS Fisher BioReagents 211911
SuperSignal West Femto Maximum Sensitivity Substrate Thermo Scientific 34096
Clarity Western ECL substrate Bio-Rad 1705061
Experimental models: Cell lines
HeLa EM2-11ht, TCAB1 KO This paper N/A
HeLa EM2-11ht, FLAG-HaloTag-TERT WT, HA-mEOS3.2-TRF2 Schmidt et al.24 N/A
HeLa EM2-11ht, FLAG-HaloTag-TERT WT, HA-mEOS3.2-TRF2, TCAB1 KO This paper N/A
HeLa EM2-11ht, FLAG-HaloTag-TERT WT, HA-mEOS3.2-TRF2, TR KO This paper N/A
HeLa EM2-11ht, FLAG-HaloTag-TERT WT, HA-mEOS3.2-TRF2, 3xMS2-TR This paper N/A
HeLa EM2-11ht, FLAG-HaloTag-TERT WT, HA-mEOS3.2-TRF2, 3xMS2-TR, TCAB1 KO This paper N/A
Oligonucleotides
All Oligonucleotides used in this study can be found in Table S1
Recombinant DNA
pHTN HaloTag® CMV-neo Promega G7721
pFastBac1 Life Technologies 10360014
pX330 Cong et al.37 Addgene: 42230
pmaxGFP Lonza Control from Kits
mCherry-TERT Schmidt et al.38 N/A
TERT (pVAN107) Cristofari and Lingner39 N/A
mCherry-Dyskerin This paper N/A
3xFLAG-HaloTag-dyskerin This paper N/A
GFP-Nucleolin Takagi et al.40 Addgene: 28176
GFP-NPM1 Wang et al.41 Addgene: 17578
mTagBFP-Nucleus-7 (BFP-NLS) Addgene Addgene: 55265
BFP-coilin Schmidt et al.24 N/A
pSUPER TR Cristofari and Lingner39 N/A
LhTRmin Vogan et al.19 N/A
pBS U3-hTR-500 Fu and Collins42 Addgene: 28170
TR knockout HRD This paper N/A
pHAGE-UBC-MCP-mNeonGreen This paper N/A
3xMS-TR-100-PURO HRD This paper N/A
Software and algorithms
MATLAB 2019a Mathworks Inc., USA http://mathworks.com
ParallelProcess_fastSPT_JF646.m Hansen et al.27 https://github.com/elifesciences-publications/SPT_LocAndTrack
ImageQuant TL 8.2 Cytiva cytivalifesciences.com
Spot-On Hansen et al.27 https://github.com/elifesciences-publications/spot-on-matlab
Other
SuperScript III Invitrogen 18080044
Maxima SYBR Green qPCR Master Mix Thermo Scientific K0251
Random Hexamers Invitrogen N8080127
RiboLock RNase Inhibitor Thermo Scientific EO0382
HOECHST 33342 Invitrogen 62249
Protein G Agarose Millipore Sigma 11243233001
4-15% Mini-PROTEAN TGX precast protein gels Bio-Rad 4561083
Trans-Blot Turbo RTA Mini 0.2 μm Nitrocellulose Kit Bio-Rad 1704270
FxCycle Propidium iodide/RNase staining solution Thermo Scientific F10797
RNeasy Mini Kit Qiagen 74106