Antibodies |
anti-TCAB1 rabbit polyclonal antibody |
Proteintech |
14761-1-AP |
anti-TCAB1 rabbit polyclonal antibody |
Abcam |
ab224444 |
anti-TCAB1 rabbit polyclonal antibody |
Novus Biologicals |
NB100-68252 |
anti-GAR1 rabbit polyclonal antibody |
Proteintech |
11711-1-AP |
anti-Coilin mouse monoclonal antibody |
Abcam |
ab87913 |
anti-Dyskerin mouse monoclonal antibody |
Santa Cruz Biotech. |
sc-373956 |
anti-TERT recombinant rabbit monoclonal antibody |
Abcam |
ab30202 |
anti-TERT sheep polyclonal antibody |
Scott Cohen |
Abx120550 |
anti-Fibrillarin mouse monoclonal antibody |
Novus Biologicals |
NB300-269 |
anti-Lamin B1 rabbit polyclonal antibody |
Proteintech |
12987-1-AP |
anti-Rabbit Cy3 secondary antibody |
Invitrogen |
A-10520 |
anti-Mouse Alexa 647 secondary antibody |
Invitrogen |
A-21235 |
anti-Mouse Alexa 405 secondary antibody |
Invitrogen |
A-31553 |
anti-Mouse HRP |
Invitrogen |
A-31430 |
anti-Rabbit HRP |
Invitrogen |
A-31460 |
Chemicals, peptides, and recombinant proteins |
JF646 HaloTag Ligand |
Grimm et al.35
|
N/A |
Prolong Diamond Antifade Mountant |
Life Technologies |
P36970 |
Thymidine |
Sigma |
T1895 |
Puromycin 10 mg/mL |
Gibco |
A1113803 |
Lipofectamine 2000 |
Invitrogen |
11668019 |
dGTP [α-32P] 3000 Ci/mmol 10 mCi/mL |
Perkin Elmer |
BLU514H250UC |
TERT peptide ARPAEEATSLEGALSGTRH |
Cohen et al.36
|
N/A |
Dextrane sulfate |
Sigma |
D8906-10G |
E. coli tRNA |
Sigma |
10109541001 |
Salmon Sperm DNA |
Invitrogen |
15632011 |
Vanadyl Ribonucleoside Complexes |
Sigma |
R3380-5ML |
CHAPS |
Fisher BioReagents |
211911 |
SuperSignal West Femto Maximum Sensitivity Substrate |
Thermo Scientific |
34096 |
Clarity Western ECL substrate |
Bio-Rad |
1705061 |
Experimental models: Cell lines |
HeLa EM2-11ht, TCAB1 KO |
This paper |
N/A |
HeLa EM2-11ht, FLAG-HaloTag-TERT WT, HA-mEOS3.2-TRF2 |
Schmidt et al.24
|
N/A |
HeLa EM2-11ht, FLAG-HaloTag-TERT WT, HA-mEOS3.2-TRF2, TCAB1 KO |
This paper |
N/A |
HeLa EM2-11ht, FLAG-HaloTag-TERT WT, HA-mEOS3.2-TRF2, TR KO |
This paper |
N/A |
HeLa EM2-11ht, FLAG-HaloTag-TERT WT, HA-mEOS3.2-TRF2, 3xMS2-TR |
This paper |
N/A |
HeLa EM2-11ht, FLAG-HaloTag-TERT WT, HA-mEOS3.2-TRF2, 3xMS2-TR, TCAB1 KO |
This paper |
N/A |
Oligonucleotides |
All Oligonucleotides used in this study can be found in Table S1
|
|
|
Recombinant DNA |
pHTN HaloTag® CMV-neo |
Promega |
G7721 |
pFastBac1 |
Life Technologies |
10360014 |
pX330 |
Cong et al.37
|
Addgene: 42230 |
pmaxGFP |
Lonza |
Control from Kits |
mCherry-TERT |
Schmidt et al.38
|
N/A |
TERT (pVAN107) |
Cristofari and Lingner39
|
N/A |
mCherry-Dyskerin |
This paper |
N/A |
3xFLAG-HaloTag-dyskerin |
This paper |
N/A |
GFP-Nucleolin |
Takagi et al.40
|
Addgene: 28176 |
GFP-NPM1 |
Wang et al.41
|
Addgene: 17578 |
mTagBFP-Nucleus-7 (BFP-NLS) |
Addgene |
Addgene: 55265 |
BFP-coilin |
Schmidt et al.24
|
N/A |
pSUPER TR |
Cristofari and Lingner39
|
N/A |
LhTRmin |
Vogan et al.19
|
N/A |
pBS U3-hTR-500 |
Fu and Collins42
|
Addgene: 28170 |
TR knockout HRD |
This paper |
N/A |
pHAGE-UBC-MCP-mNeonGreen |
This paper |
N/A |
3xMS-TR-100-PURO HRD |
This paper |
N/A |
Software and algorithms |
MATLAB 2019a |
Mathworks Inc., USA |
http://mathworks.com
|
ParallelProcess_fastSPT_JF646.m |
Hansen et al.27
|
https://github.com/elifesciences-publications/SPT_LocAndTrack
|
ImageQuant TL 8.2 |
Cytiva |
cytivalifesciences.com
|
Spot-On |
Hansen et al.27
|
https://github.com/elifesciences-publications/spot-on-matlab
|
Other |
SuperScript III |
Invitrogen |
18080044 |
Maxima SYBR Green qPCR Master Mix |
Thermo Scientific |
K0251 |
Random Hexamers |
Invitrogen |
N8080127 |
RiboLock RNase Inhibitor |
Thermo Scientific |
EO0382 |
HOECHST 33342 |
Invitrogen |
62249 |
Protein G Agarose |
Millipore Sigma |
11243233001 |
4-15% Mini-PROTEAN TGX precast protein gels |
Bio-Rad |
4561083 |
Trans-Blot Turbo RTA Mini 0.2 μm Nitrocellulose Kit |
Bio-Rad |
1704270 |
FxCycle Propidium iodide/RNase staining solution |
Thermo Scientific |
F10797 |
RNeasy Mini Kit |
Qiagen |
74106 |