Table 2.

Functional annotation of Daphnia magna isolates. Functional annotation of the Daphnia magna strains NIES and Xinb3, compared to the LRV0_1 in this study, including the whole set of identified genes by the Funannotate pipeline and the reduced gene set supported by multiple lines of evidence. The total number of protein-coding genes, the total number of KO and unique KO terms, as well as the total number of KEGG pathways are listed

	NIES (Byeon et al. 2022)	Xinb3 (Orsini et al. 2016, 2018)	LRV0_1 (Funannotate; this study)	LRV0_1 (reduced gene set; this study)
Number of protein-coding genes	16 891	29 127	31 337	26 823
Number of genes with KO term	7966	9836	7551	7551
Number of unique KO terms	5569	5627	5382	5382
Number of KEGG pathways	130