Table 3.
PCR primers used in this study.
| Gene | Primer | Sequence | Annealing T | Source |
|---|---|---|---|---|
| COI | LCO1490 | 5’ GGTCAACAAATCATAAAGATATTGG | 43–45 °C | Folmer et al. 1994 |
| HCO2198 | 5’ TAAACTTCAGGGTGACCAAAAAATCA | Folmer et al. 1994 | ||
| COI | CO1LF | 5’ TTTCAACAAATCATAAAGATAT | 43–45 °C | Norenburg, unpublished |
| CO1DR | 5’ GAGAAATAATACCAAAACCAGG | Norenburg, unpublished | ||
| 16S rRNA | 16SARL | 5’ CGCCTGTTTATCAAAAACAT | 45–50 °C | Palumbi et al. 1991 |
| 16SBRH | 5’ CCGGTCTGAACTCAGATCACGT | Palumbi et al. 1991 | ||
| 16S rRNA | 16SAF | 5’ TCGTCTGTTTATCAAAAACATAGY | 45–50 °C | Norenburg unpublished |
| 16SKR | 5’ AATAGATAGAAACCAACCTGGC | Norenburg unpublished | ||
| 18S rRNA | 18SF1 | 5’ CTGGTGCCAGCAGCCGCGGYAA | 55 °C | Machida and Knowlton 2012 |
| 18SRC2 | 5’ TCCGTCAATTYCTTTAAGTT | Machida and Knowlton 2012 | ||
| 28S rRNA | LSU3 | 5’ TCCTGAGGGAAACTTCGG | 55 °C | Littlewood 1994 |
| LSU5 | 5’ ACCCGCTGAAYTTAAGCA | Littlewood 1994 |