. 2023 Oct 11;11:e15475. doi: 10.7717/peerj.15475

Table 3. GSEA analysis of the TCGA-BRCA dataset.

Description	Set size	Enrichment score	NES	p value	p. adjust
Condensation of prophase chromosomes	72	0.648142653	2.609133444	0.000384468	0.007527598
DNA methylation	63	0.64924649	2.550957964	0.000368053	0.007527598
Deposition of new cenpa containing nucleosomes at the centromere	73	0.62272815	2.511036721	0.000387747	0.007527598
Meiotic recombination	85	0.597551004	2.469681726	0.000414594	0.007527598
SIRT1 negatively regulates rrna expression	66	0.615267088	2.433992405	0.000374532	0.007527598
PRC2 methylates histones and DNA	71	0.599962935	2.413657315	0.000381825	0.007527598
Activated PKN1 stimulates transcription of AR androgen receptor regulated genes KLK2 and KLK3	65	0.598544909	2.36548707	0.000370508	0.007527598
Recognition and association of DNA glycosylase with site containing an affected purine	56	0.603186125	2.318484147	0.000351	0.007527598
DNA damage telomere stress induced senescence	80	0.563392337	2.306378423	0.000403551	0.007527598
Mitotic prophase	141	0.504722456	2.267243796	0.000542005	0.008140373
Nonhomologous end joining NHEJ	69	0.566496673	2.266201035	0.000376223	0.007527598
Pre NOTCH expression and processing	107	0.467738962	2.020954761	0.000458295	0.007527598
Signaling by NOTCH	234	0.287501505	1.378143085	0.003220612	0.03396672
TCF dependent signaling in response to WNT	232	0.286479654	1.373337984	0.006405124	0.058235094
Signaling by WNT	329	0.262444276	1.302165188	0.006944444	0.060142944

Notes.