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Speed comparison between pLM-BLAST and other methods.a
| Method | Query 1 (269) | Query 2 (55) | Query 3 (379) | Query 4 (88) | Query 5 (132) |
|---|---|---|---|---|---|
| pLM-BLAST local | 2 min 5 s | 54 s | 2 min 30 s | 1 min 3 s | 1 min 27 s |
| HHsearch | 5 min 9 s | 38 s | 3 min 4 s | 4 min 2 s | 2 min 57 s |
| EBA | 7 min 10 s | 3 min 15 s | 7 min 23 s | 3 min 46 s | 5 min 0 s |
| TM-Vec | 15 s | 15 s | 15 s | 15 s | 15 s |
The runtimes are presented in seconds, and the length of each query sequence is provided in brackets.
