Table 2.
Comparison of genome sequencing and the Omicron assay results.
| Genome sequencing result | ||||||
|---|---|---|---|---|---|---|
| Omicron screening assay result | BA.1 and sublineages | BA.2 and sublineages | BA.4 and sublineages | BA.5 and sublineages | BA.2 and BA.5 recombinants | Total |
| BA.1 | 16 | 0 | 0 | 0 | 0 | 16 |
| BA.2 | 0 | 458 | 0 | 0 | 15 | 473 |
| BA.4 | 0 | 0 | 728 | 0 | 0 | 728 |
| BA.5 | 0 | 2 | 0 | 11,084 | 0 | 11,086 |
| Indeterminate1 | 0 | 55 | 58 | 170 | 4 | 287 |
| Low viral content | 0 | 1 | 0 | 1 | 0 | 2 |
| Total | 16 | 516 | 786 | 11,255 | 19 | 12,592 |
1Indeterminate indicates that the Omicron assays did not provide an interpretable result consistent with a circulating Omicron lineage.