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. 2023 Aug 26;17(11):1884–1894. doi: 10.1038/s41396-023-01499-6

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 6 — Amino acids are shown in green; vitamins and cofactors are shown in pink. Non-standard abbreviations: 2OG 2-oxoglutarate, CH₃-S-CoM methyl coenzyme M, CHO-MFR formylmethanofuran, CO carbon monoxide, H₄-MPT Tetrahydromethanopterin, CH-H₄MPT 5,10-Methenyltetrahydromethanopterin, CH₂-H₄MPT 5,10-Methylenetetrahydromethanopterin, CH₃-H₄MPT 5-Methyltetrahydromethanopterin, CoA coenzyme A, CoB-SH Coenzyme B, CoM-SH Coenzyme M, CoM-S-S-CoB Coenzyme M 7-mercaptoheptanoylthreonine-phosphate heterodisulfide, Fum fumarate, Mal malate, MFR methanofuran, SAM S-adenosylmethionine, Succ succinate, Succ-CoA succinate coenzyme A. Putative metabolic end products are highlighted with a purple background. Metabolites that are putatively used from the host and/or environment are highlighted with an orange background.