Table 1. Genome assemblies and RNA-Seq data for the comparative analysis of ISP genes in 27 Drosophila species and the reference species D. melanogaster.
For each Assembly, the table shows the corresponding Assembly name, the GEP internal identifier, the NCBI RefSeq Accession Numbers, species names, and BioProject Accession Numbers for the RNA-Seq data.
| Assembly Name | GEP Assembly Identifier | NCBI GenBank Assembly Accession | Species Name | NCBI BioProject Accession Numbers for RNA-Seq data |
|---|---|---|---|---|
| ASM127793v1 | DbusGB1 | GCA_001277935.1 | D. busckii | PRJNA274996 |
| dgri_caf1 | DgriCAF1 | GCA_000005155.1 | D. grimshawi | PRJNA317989 |
| dvir_caf1 | DvirCAF1 | GCA_000005245.1 | D. virilis | PRJNA200701 |
| ASM278046v1 | DhydGB1 | GCA_002780465.1 | D. hydei | PRJNA373926 |
| ASM165401v1 | DnavGB1 | GCA_001654015.1 | D. navojoa | No RNA-Seq data available |
| dmoj_caf1 | DmojCAF1 | GCA_000005175.1 | D. mojavensis | PRJNA200701 |
| ASM165402v1 | DariGB1 | GCA_001654025.1 | D. arizonae | PRJNA395148 |
| dwil_caf1 | DwilCAF1 | GCA_000005925.1 | D. willistoni | PRJNA388952 |
| Dobs_1.0 | DobsGB1 | GCA_002217835.1 | D. obscura | PRJDB4576 |
| DroMir_2.2 | DmirGB2 | GCA_000269505.2 | D. miranda | PRJNA77213 |
| Dpse_3.0 | DpseGB3 | GCA_000001765.2 | D. pseudoobscura | PRJNA200701 |
| dper_caf1 | DperCAF1 | GCA_000005195.1 | D. persimilis | PRJNA388952 |
| dana_caf1 | DanaCAF1 | GCA_000005115.1 | D. ananassae | PRJNA200701, PRJNA72165, PRJNA257286, PRJNA388952 |
| Dbip_2.0 | DbipGB2 | GCA_000236285.2 | D. bipectinata | PRJNA63469 |
| Dkik_2.0 | DkikGB2 | GCA_000224215.2 | D. kikkawai | PRJNA63469 |
| Dser1.0 | DserGB1 | GCA_002093755.1 | D. serrata | PRJNA355616 |
| Dfic_2.0 | DficGB2 | GCA_000220665.2 | D. ficusphila | PRJNA63469 |
| Dele_2.0 | DeleGB2 | GCA_000224195.2 | D. elegans | PRJNA63469 |
| Drho_2.0 | DrhoGB2 | GCA_000236305.2 | D. rhopaloa | PRJNA63469 |
| Dtak_2.0 | DtakGB2 | GCA_000224235.2 | D. takahashii | PRJNA63469 |
| Dbia_2.0 | DbiaGB2 | GCA_000233415.2 | D. biarmipes | PRJNA63469 |
| Dsuzukii.v01 | DsuzGB1 | GCA_000472105.1 | D. suzukii | PRJNA221549 |
| Deug_2.0 | DeugGB2 | GCA_000236325.2 | D. eugracilis | PRJNA63469 |
| dyak_caf1 | DyakCAF1 | GCA_000005975.1 | D. yakuba | PRJNA200701 |
| dere_caf1 | DereCAF1 | GCA_000005135.1 | D. erecta | PRJNA414017, PRJNA264407 |
| ASM75419v3/ASM75419v2 | DsimGB2 | GCA_000754195.3 | D. simulans | PRJNA200701 |
| dsec_caf1 | DsecCAF1 | GCA_000005215.1 | D. sechellia | PRJNA205470, PRJNA414017 |
| Release 6 plus ISO1 MT | dm6 | GCA_000001215.4 | D. melanogaster | PRJNA481740 |