Table 3. Software Version Information and release dates for the web-based applications used by the manual gene annotation protocol for the Pathways Project.

Software	Version	Release Date
GEP UCSC Genome Browser	v400; FlyBase 6.43	Dec. 31, 2021
Gene Model Checker	v2.0; FlyBase 6.43	Dec. 31, 2021
Sequence Updater	v2.0	Jan. 15, 2021
BEDTools	v2.30.0	Jan. 23, 2021
Gene Record Finder	v1.3; FlyBase 6.43	Dec. 31, 2021
Small Exons Finder	Prototype; v1.0	Dec. 31, 2020
Annotation Files Merger	v2.0; FlyBase 6.43	Dec. 31, 2021
BLAST+	v2.12.0	June 28, 2021