. 2023 Oct 1;39(5):494–503. doi: 10.5423/PPJ.OA.07.2023.0102

Table 2.

List of race-specific primers used in this study

Marker	Primer name	Sequences (5′ → 3′)	Length (bp)	Annealing conditions	Reference
Xcc specific	Xcc-53-F	CGGTGCCAGCGACTCGCCACG	930	70°C, 20 s, 25 cycles	Rubel et al. (2019a)
Xcc specific	Xcc-53-R	TCCACGGCGGCGGGCCGATCTG	930	70°C, 20 s, 25 cycles	Rubel et al. (2019a)
Xcc Race 1 specific	Xcc-47R1-F	CCTCCTGAGTCATGGCAATGGC	1,089	65°C, 40 s, 20 cycles	Rubel et al. (2019b)
Xcc Race 1 specific	Xcc-47R1-R	TAGCAGGGGAGTGCTGCTTGC	1,089	65°C, 40 s, 20 cycles	Rubel et al. (2019b)
Xcc Race 2 specific	Xcc-R2-89.2-F	CGCCTTGATGTAGCCCAGTA	929	58°C, 40 s, 18 cycles	Rubel et al. (2019b)
Xcc Race 2 specific	Xcc-R2-89.2-R	GGTGGCTTGGACAACGTTC	929	58°C, 40 s, 18 cycles	Rubel et al. (2019b)
Xcc Race 3 specific	XccR3-49-F	AAAGAGCCAATGAAGGGCGAACA	867	63°C, 40 s, 25 cycles	Afrin et al. (2018)
Xcc Race 3 specific	XccR3-49-R	TATGTCAGGCGCATAATCCGCAAT	867	63°C, 40 s, 25 cycles	Afrin et al. (2018)
Xcc Race 4 specific	Xcc2-46R4-F	GCGTAGCGAAAACTGGTAGTTC	578	66°C, 40 s, 20 cycles	Rubel et al. (2017)
Xcc Race 4 specific	Xcc2-46R4-R	GCACAGGCGCACCAGCATATGGC	578	66°C, 40 s, 20 cycles	Rubel et al. (2017)
Xcc Race 5 specific	XccR5-89.2-F	GCGAGCGATTTCACCTTCAT	1,515	63°C, 40 s, 22 cycles	Afrin et al. (2019)
Xcc Race 5 specific	XccR5-89.2-R	AATTCGGACAACAGCGCAAT	1,515	63°C, 40 s, 22 cycles	Afrin et al. (2019)
Xcc Race 6 specific	XccR6-60-F	TGTAGAATCTTTAGCTGGCGC	693	63°C, 40 s, 22 cycles	Afrin et al. (2020)
Xcc Race 6 specific	XccR6-60-R	TTCAATGCATTCCCGACACG	693	63°C, 40 s, 22 cycles	Afrin et al. (2020)