TABLE 1.

KEGG pathway enrichment analysis of genes in co-expression modules

Module	KEGG ID	Pathway	Count	P-value
Greenyellow	fgr03420	Nucleotide excision repair	16	2.75E−07
	fgr03440	Homologous recombination	9	2.49E−06
	fgr03450	Non-homologous end-joining	5	4.13E−04
	fgr03022	Basal transcription factors	10	7.21E−04
	fgr00400	Phenylalanine, tyrosine, and tryptophan biosynthesis	9	7.90E−04
	fgr03410	Base excision repair	8	8.08E−04
	fgr01230	Biosynthesis of amino acids	25	1.04E−03
	fgr04141	Protein processing in endoplasmic reticulum	15	9.63E−03
	fgr03013	RNA transport	16	1.04E−02
	fgr03430	Mismatch repair	6	1.39E−02
	fgr02010	ABC transporters	8	1.59E−02
	fgr04136	Autophagy	6	1.75E−02
	fgr03050	Proteasome	8	1.89E−02
	fgr04120	Ubiquitin-mediated proteolysis	10	3.33E−02
	fgr04138	Autophagy	12	3.36E−02
Lightcyan	fgr01100	Metabolic pathways	39	4.95E−07
	fgr00260	Glycine, serine, and threonine metabolism	5	6.17E−03
	fgr00600	Sphingolipid metabolism	3	1.31E−02
	fgr00430	Taurine and hypotaurine metabolism	2	1.70E−02
	fgr00100	Steroid biosynthesis	3	1.75E−02
	fgr00230	Purine metabolism	4	2.31E−02
	fgr01110	Biosynthesis of secondary metabolites	15	2.71E−02
	fgr00250	Alanine, aspartate, and glutamate metabolism	3	4.50E−02
Purple	fgr00190	Oxidative phosphorylation	21	1.21E−09
	fgr04011	MAPK a signaling pathway	13	9.82E−06
	fgr01100	Metabolic pathways	82	2.16E−05
	fgr00020	Tricarboxylic acid cycle	7	8.67E−04
	fgr01040	Biosynthesis of unsaturated fatty acids	4	2.84E−03
	fgr01212	Fatty acid metabolism	7	5.63E−03
	fgr04139	Mitophagy	5	2.09E−02
	fgr04933	AGE-RAGE signaling pathway in diabetic complications	3	2.85E−02
	fgr04113	Meiosis	7	4.42E−02

^a MAPK: mitogen activated protein kinase