Table 2.

An overview of the Illumina sequencing performed on the biofloc metagenomes obtained from a commercial BFT-based aquaculture system.

Sample code	Total bases (Gb)a	Raw PE reads (M)b	High-quality PE reads (M)c	Reads retained (%)d	BioSample accession number	SRA accession number
Bf01S1	12.71	42.09	36.21	86.03	SAMN34591950	SRR24442559
Bf02S1	12.81	42.44	36.27	85.47	SAMN34591951	SRR24442558
Bf03S1	16.82	55.70	47.11	84.57	SAMN34591952	SRR24442557
Bf04S1	12.30	40.74	34.23	84.01	SAMN34591953	SRR24442556
Bf05S1	12.79	42.37	36.72	84.57	SAMN34591954	SRR24442555
Bf06L2	12.51	41.45	34.76	83.86	SAMN34591955	SRR24442554
Bf07L2	13.02	43.13	36.88	85.52	SAMN34591956	SRR24442553
Bf08L2	13.66	45.26	38.07	84.13	SAMN34591957	SRR24442552

^aTotal number of nucleotide bases (Gigabases). ^bNumber of paired-end (PE) reads obtained from Illumina sequencing (million). ^cNumber of paired-end reads retained after applying quality control criteria (million). ^dPercentage of total reads retained after applying quality control criteria.