Table 1.

Annotated statistically significant independent SNPs identified using VariantSpark and the UKBB cohort. Replication status to ADNI validation cohort and GWAS Catalog included.

Chr	Pos	Alt	RSID	P value	Gene	ADNI	GWAS catalog
1	174049377	C	rs72711440	4.36E+09	RABGAP1L-DT	FALSE	FALSE
1	193137934	C	rs139963893	2.50E+09	CDC73	FALSE	TRUE
1	244007787	A	rs75965920	5.16E+09	AKT3	FALSE	FALSE
2	38520113	A	rs56302953	3.05E+09	ATL2	FALSE	TRUE
2	205966824	G	rs116192932	1.64E+09	PARD3B	FALSE	TRUE
2	215673948	C	rs71579843	1.70E+09	BARD1	FALSE	FALSE
2	235751287	G	rs114656810	2.29E+09	SH3BP4	TRUE	FALSE
3	76534878	C	rs74801337	4.85E+09	ROBO2	FALSE	FALSE
3	154755590	C	rs9829241	1.39E+09	MME	FALSE	FALSE
4	116269757	A	rs147896092	6.36E+05	NDST4	FALSE	FALSE
4	178201067	G	rs76175875	2.34E+08	NEIL3	FALSE	TRUE
5	36648950	C	rs115172522	1.07E+09	SLC1A3	FALSE	TRUE
5	93761812	G	rs112217406	2.73E+09	KIAA0825	FALSE	FALSE
5	153560523	G	rs71585927	3.90E+09	GALNT10	FALSE	TRUE
5	168782459	C	rs78269616	1.07E+07	SLIT3	FALSE	FALSE
6	46454250	G	rs114866534	1.49E+09	RCAN2	FALSE	TRUE
6	81120137	G	rs117103821	1.75E+07	BCKDHB	FALSE	TRUE
6	133182939	NA	rs57823471	5.59E+09	NA	TRUE	TRUE
6	148512131	C	rs117160741	5.15E+07	SASH1	TRUE	TRUE
6	150085133	A	rs117243801	2.84E+08	PCMT1	FALSE	TRUE
7	101930310	C	rs11552019	5.76E+09	SH2B2	FALSE	TRUE
8	52718273	T	rs112585504	3.10E+09	PXDNL	FALSE	FALSE
8	65042594	T	rs78789176	5.43E+08	LINC01414	FALSE	TRUE
9	25640336	A	rs77057081	1.16E+09	TUSC1	FALSE	TRUE
9	108857477	C	rs117992330	3.40E+09	TMEM38B	FALSE	TRUE
9	136144593	G	rs66697526	3.65E+08	ABO	FALSE	TRUE
10	66463703	C	rs189699806	4.56E+07	ANXA2P3	FALSE	FALSE
10	70366297	C	rs61868095	3.59E+08	TET1	FALSE	TRUE
10	122310126	C	rs79486209	5.24E+09	PLPP4	FALSE	FALSE
11	12566857	C	rs76154502	7.12E+08	PARVA	FALSE	TRUE
11	44909137	C	rs78150932	2.09E+07	TSPAN18	FALSE	TRUE
11	118613605	A	rs139648410	1.08E+09	DDX6	FALSE	FALSE
12	65040623	G	rs79774071	1.12E+09	RASSF3	FALSE	TRUE
12	107592329	G	rs75378184	9.57E+08	CRY1	FALSE	TRUE
13	22104766	T	rs116942699	4.31E+09	MICU2	FALSE	FALSE
13	55121441	G	rs117658626	5.37E+07	MIR1297	FALSE	FALSE
14	62969759	G	rs79473324	1.39E+09	KCNH5	FALSE	FALSE
14	99261321	C	rs142983586	4.35E+07	C14orf177	FALSE	TRUE
16	53388460	A	rs2908783	2.29E+09	LOC643802	FALSE	FALSE
17	2761430	C	rs74252350	2.63E+09	RAP1GAP2	FALSE	FALSE
17	54490063	C	rs147441895	4.16E+08	ANKFN1	FALSE	FALSE
18	22582278	T	rs79110874	3.25E+09	LINC01894	FALSE	FALSE
18	77685936	G	rs113702893	4.25E+09	SLC66A2	FALSE	FALSE
19	17262529	C	rs117951200	1.12E+09	MYO9B	FALSE	TRUE
19	45411941	T	rs429358	0.00E+00	APOE	TRUE	TRUE
19	55511927	G	rs1560714	2.98E+09	NLRP2	FALSE	TRUE
21	36714721	A	rs2834914	1.22E+09	LOC100506403	FALSE	FALSE