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. 2023 Oct 17;14:6556. doi: 10.1038/s41467-023-42336-w

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — a Alignment of in silico genomic maps, including draft contigs of A. oxysepala and the five largest Bionano DLE-1 maps. Collinear DLE-1 markers on the two maps are linked with gray lines. Regions in yellow exhibit breaks in collinearity between the two maps. b Hi-C contacts of the original scaffolds of A. oxysepala. The order of contigs and scaffolds are presented with green and blue squares, respectively, along the diagonal. The top tracks show the AQI (local AQI score), hic.cov, and hic.mis detected with 3D-DNA. c Alignment of in silico genomic maps, including CRAQ-corrected contigs and optical DLE-1 maps. d Hi-C contacts of the corrected scaffolds for A. oxysepala.