Table 2.
Computing requirements for the analysis of a sediment and a water column EMO BON sample as well as a Tara Oceans water sample, using metaGOflow in a “fat” node of the Zorba HPC
| Computational time (hours) | Memory (max RAM in Gb) | |||||
|---|---|---|---|---|---|---|
| Workflow step(s) | EB sediment | EB water | TO water | EB sediment | EB water | TO water |
| Preprocessing and taxonomy inventory (steps 1 and 2) | 14.5 | 12.6 | 26.4 | 4.55 | 4.65 | 4.15 |
| Assembly (step 3) | 1.6 | 1.22 | 0.4 | 8.8 | 4.38 | 2.7 |
| Gene calling and functional annotation (steps 4 and 5) | 98.7 | 92.4 | 84.2 | 205.1 | 188.6 | 155.4 |
EB: EMO BON; TO: Tara Oceans.