TABLE 5.
The comparison performance of machine learning models using qNet feature, & features, and 14 in silico features in predicting high, intermediate, and no TdP risk of drugs.
| Model | Features | Accuracy | Sensitivity | Specificity | AUC |
|---|---|---|---|---|---|
| KNN | qNet | 0.608 (0.606–0.609) | 0.403 (0.401–0.406) | 0.702 (0.701–0.704) | 0.562 (0.559–0.565) |
| & | 0.747 (0.741–0.753) | 0.582 (0.576–0.588) | 0.809 (0.806–0.812) | 0.758 (0.746–0.769) | |
| 14 In Silico Features | 0.762 (0.761–0.763) | 0.607 (0.606–0.608) | 0.816 (0.815–0.817) | 0.711 (0.710–0.712) | |
| XGBoost | qNet | 0.718 (0.717–0.719) | 0.515 (0.514–0.516) | 0.775 (0.774–0.776) | 0.702 (0.701–0.703) |
| & | 0.789 (0.784–0.796) | 0.627 (0.621–0.632) | 0.804 (0.834–0.841) | 0.804 (0.799–0.809) | |
| 14 In Silico Features | 0.798 (0.785–0.810) | 0.650 (0.620–0.679) | 0.841 (0.829–0.854) | 0.883 (0.867–0.899) | |
| RF | qNet | 0.718 (0.717–0.719) | 0.515 (0.514–0.516) | 0.775 (0.774–0.776) | 0.703 (0.702–0.70) |
| & | 0.790 (0.789–0.791) | 0.616 (0.615–0.617) | 0.834 (0.833–0.835) | 0.794 (0.793–0.795) | |
| 14 In Silico Features | 0.835 (0.831–0.839) | 0.705 (0.697–0.714) | 0.869 (0.866–0.872) | 0.905 (0.904–0.906) | |
| ANN | qNet | 0.719 (0.718–0.720) | 0.517 (0.515–0.519) | 0.776 (0.775–0.777) | 0.705 (0.704–0.706) |
| & | 0.790 (0.788–0.791) | 0.620 (0.616–0.625) | 0.835 (0.833–0.836) | 0.801 (0.799–0.803) | |
| 14 In Silico Features | 0.852 (0.846–0.857) | 0.762 (0.758–0.766) | 0.888 (0.886–0.889) | 0.911 (0.907–0.914) |
The bold values mean the highest performance obtained.