Table 2. Final (physical) time for model steady states in ODE benchmarks.
Model: | Multistate | Multisite2 | Egfr_net | BCR | Fceri_gamma2 |
---|---|---|---|---|---|
20 s | 2 s | 10 s | 20,000 s | 150 s |
For each model, we determined the time at which it had (approximately) reached a steady state. These times were used for the ODE benchmarks in Fig 3 and Fig A in S1 Text. Unlike the other models, BCR exhibits a limit cycle. Here, rather than simulating until an (approximate) steady state had been reached, we simulated it for 20,000 time units (permitting it to complete 3 pulse events, Fig G in S1 Text).