REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Deposited data | ||
bulk RNAseq of skin biopsy from focuSSced | This paper | GSE231694 |
Microarray of skin biopsy from faSScinate | Stifano et al.42 | GSE106358 |
bulk RNAseq of whole blood PAXgene from faSScinate | This paper | GSE231694 |
bulk RNAseq of explanted lung tissue from ILD patients | This paper | GSE231694 |
scRNAseq of fibrotic lungs | Gao et al.43 | GSE159354 |
Software and algorithms | ||
R v 4.0.2 | http://www.R-project.org | |
RStudio | http://www.rstudio.com/ | |
DESeq2 package | Bioconductor | https://bioconductor.org/packages/release/bioc/html/DESeq2.html |
WGCNA package | CRAN | https://cran.r-project.org/web/packages/WGCNA/index.html |
clusterProfiler package | Bioconductor | https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html |
GeneOverlap package | Bioconductor | https://bioconductor.org/packages/release/bioc/html/GeneOverlap.html |
Seurat package | CRAN | https://cran.r-project.org/web/packages/Seurat/index.html |