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. 2023 Oct 5;26(11):108133. doi: 10.1016/j.isci.2023.108133
REAGENT or RESOURCE SOURCE IDENTIFIER
Deposited data

bulk RNAseq of skin biopsy from focuSSced This paper GSE231694
Microarray of skin biopsy from faSScinate Stifano et al.42 GSE106358
bulk RNAseq of whole blood PAXgene from faSScinate This paper GSE231694
bulk RNAseq of explanted lung tissue from ILD patients This paper GSE231694
scRNAseq of fibrotic lungs Gao et al.43 GSE159354

Software and algorithms

R v 4.0.2 http://www.R-project.org
RStudio http://www.rstudio.com/
DESeq2 package Bioconductor https://bioconductor.org/packages/release/bioc/html/DESeq2.html
WGCNA package CRAN https://cran.r-project.org/web/packages/WGCNA/index.html
clusterProfiler package Bioconductor https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html
GeneOverlap package Bioconductor https://bioconductor.org/packages/release/bioc/html/GeneOverlap.html
Seurat package CRAN https://cran.r-project.org/web/packages/Seurat/index.html