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. 2023 Oct 18;22:175. doi: 10.1186/s12944-023-01935-8

Table 3.

Information on FH-related gene (LDLR, APOB, and PCSK9) variants in the family

Numbers Gene Name ID DNA change Mutation type Clinical classification Allele
Frequency
1 LDLR rs28942084 c.2054C>T Missense Likely Pathogenic 0.00003
2 LDLR rs2228671 c.81C>T Synonymous Benign -
3 LDLR rs5930 c.1413A>G Synonymous Benign 0.6336
4 LDLR rs5929 c.1617C>T Synonymous Benign 0.07550
5 LDLR rs688 c.1773C>T Synonymous Benign 0.3825
6 LDLR rs5925 c.1959T>C Synonymous Benign 0.4150
7 LDLR rs5927 c.2232A>G Synonymous Unclassified 0.7776
8 LDLR  - c.497delinsGGATCCCCCAGCTGCATCCCCCAG Frameshift insertion Unreported -
9 APOB rs17240441 c.35_43del Non-frameshift deletion Unreported -
10 APOB rs1367117 c.293C>T Missense Benign/Likely benign 0.2562
11 APOB rs13306198 c.581C>T Missense Benign/Likely benign 0.00470
12 APOB rs679899 c.1853C>T Missense Benign/Likely benign 0.4818
13 APOB rs185540148 c.3314C>T Missense Unreported 0.000007075
14 APOB rs568413 c.4265G > A Missense Unreported 0.9998
15 APOB rs584542 c.6937A>G Missense Benign -
16 APOB rs676210 c.8216C>T Missense Unreported 0.2866
17 APOB rs1042031 c.12541G>A Missense Uncertain significance -
18 APOB rs1042034 c.13013G>A Missense Benign 0.7119
19 APOB rs693 c.7545C>T Synonymous Benign 0.3877
20 APOB rs1041968 c.6936C> T Synonymous Benign 0.3872
21 PCSK9 rs562556 c.1420G>A Missense Unreported 0.8539
22 PCSK9 rs505151 c.2009G>A Missense Unreported 0.9417
23 PCSK9 rs509504 c.1026A>G Synonymous Benign 0.9942
24 PCSK9 rs540796 c.1380A>G Synonymous Benign 0.8539

Abbreviations: APOB, apolipoprotein B; LDLR, low-density lipoprotein receptor; PCSK9, proprotein convertase subtilisin/kexin 9