TABLE 1.
Isolate name | Collection date | Location (region) | Total no. of raw read pairs | No. of mapped read pairs | Median coverage depth (reads) | ICPIa | GenBank accession no. | SRA accession no. |
---|---|---|---|---|---|---|---|---|
Chicken/Tanzania/Mbeya/MT1/2012 | 05/30/2012 | Sokomatola (Mbeya) | 2,263,648 | 687,157 | 7,300 | 1.88 | MK633933 | SRR24142067 |
Chicken/Tanzania/Iringa/IM40/2012 | 06/04/2012 | Mashine tatu (Iringa) | 671,067 | 449,556 | 5,366 | 1.88 | MK633935 | SRR24142063 |
Chicken/Tanzania/Arusha/AK5/2012 | 05/27/2012 | Kilombero (Arusha) | 1,006,401 | 454,248 | 5,287 | 1.78 | MK633938 | SRR24142066 |
Chicken/Tanzania/Arusha/AC53/2012 | 05/27/2012 | Arusha Central (Arusha) | 1,325,590 | 917,398 | 10,854 | 1.83 | MK633944 | SRR24142065 |
Chicken/Tanzania/Tanga/N1/2012 | 05/21/2012 | Ngamiani (Tanga) | 813,624 | 316,250 | 3,292 | 1.95 | MK633951 | SRR24142064 |
Chicken/Tanzania/Tanga/N34/2012 | 05/21/2012 | Ngamiani (Tanga) | 881,511 | 437,253 | 5,182 | 1.88 | MK633953 | SRR24142062 |
Chicken/Tanzania/Tanga/N6/2012 | 05/21/2012 | Ngamiani (Tanga) | 844,044 | 484,424 | 5,873 | 1.88 | MK633952 | SRR24142061 |
ICPI = intracerebral pathogenicity index.