Table 1.
The information of total reads for 20 samples in RNA-Seq
| Sample | Raw reads | Clean reads | Q20 | Q30 | Total mapping ratio |
|---|---|---|---|---|---|
| VEH+SAL1 | 46364052 | 45526184 | 97.12% | 92.19% | 91.75% |
| VEH+SAL2 | 43347624 | 42723334 | 97.42% | 92.87% | 91.06% |
| VEH+SAL3 | 42544234 | 41677210 | 97.48% | 93.02% | 92.92% |
| VEH+SAL4 | 48219202 | 46873332 | 97.46% | 93.02% | 92.96% |
| VEH+SAL5 | 48252082 | 46871826 | 97.42% | 92.91% | 92.40% |
| GTN+SAL1 | 42592894 | 41924880 | 97.15% | 92.24% | 91.79% |
| GTN+SAL2 | 50024156 | 48176852 | 97.06% | 92.11% | 92.22% |
| GTN+SAL3 | 44432266 | 43482770 | 96.89% | 91.72% | 92.34% |
| GTN+SAL4 | 41833498 | 40794792 | 97.07% | 92.07% | 91.25% |
| GTN+SAL5 | 46251142 | 44950992 | 96.97% | 91.99% | 91.75% |
| GTN+RIZ1 | 42450534 | 40224730 | 97.30% | 92.71% | 92.92% |
| GTN+RIZ2 | 43457316 | 42602950 | 97.24% | 92.49% | 91.51% |
| GTN+RIZ3 | 40269634 | 38972230 | 97.42% | 92.94% | 92.14% |
| GTN+RIZ4 | 44683006 | 43979394 | 97.48% | 92.99% | 90.76% |
| GTN+RIZ5 | 45805608 | 45055872 | 97.13% | 92.26% | 95.05% |
| VEH+RIZ1 | 43726554 | 42866586 | 97.51% | 93.10% | 91.99% |
| VEH+RIZ2 | 45247948 | 44241210 | 97.18% | 92.32% | 92.32% |
| VEH+RIZ3 | 44792326 | 44111330 | 97.06% | 92.02% | 91.43% |
| VEH+RIZ4 | 55048904 | 53073048 | 97.12% | 92.23% | 92.52% |
| VEH+RIZ5 | 57465506 | 55257492 | 97.43% | 92.94% | 92.83% |
Q20 and Q30: the percentage of bases with a Phred value greater than 20 and 30, respectively in the total bases, where Phred = −10log10 (e). n = 5 mice per group.